Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C6649_RS22260 Genome accession   NZ_CP028172
Coordinates   4364988..4365518 (+) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella enterica strain CFSAN064033     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4359988..4370518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6649_RS22230 (C6649_22200) - 4360227..4360643 (+) 417 WP_000270392.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C6649_RS22235 (C6649_22205) - 4360646..4361002 (+) 357 WP_000155665.1 MmcQ/YjbR family DNA-binding protein -
  C6649_RS22240 (C6649_22210) - 4361003..4361341 (-) 339 WP_021001024.1 hypothetical protein -
  C6649_RS22245 (C6649_22215) - 4361328..4361783 (-) 456 WP_072208372.1 hypothetical protein -
  C6649_RS22250 (C6649_22220) uvrA 4361915..4364740 (-) 2826 WP_000357724.1 excinuclease ABC subunit UvrA -
  C6649_RS22260 (C6649_22230) ssb 4364988..4365518 (+) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C6649_RS22265 (C6649_22235) siiA 4366768..4367400 (+) 633 WP_000389233.1 SPI-4 type I secretion system auxiliary protein SiiA -
  C6649_RS22270 (C6649_22240) - 4367397..4368785 (+) 1389 WP_024792338.1 MotA/TolQ/ExbB proton channel family protein -
  C6649_RS22275 (C6649_22245) siiC 4368775..4370094 (+) 1320 WP_001541306.1 SPI-4 type I secretion system protein SiiC -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=282030 C6649_RS22260 WP_000168322.1 4364988..4365518(+) (ssb) [Salmonella enterica strain CFSAN064033]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=282030 C6649_RS22260 WP_000168322.1 4364988..4365518(+) (ssb) [Salmonella enterica strain CFSAN064033]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGTGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477

Multiple sequence alignment