Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LL14B4_RS09080 Genome accession   NZ_CP028160
Coordinates   1859925..1860914 (-) Length   329 a.a.
NCBI ID   WP_109991118.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 14B4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1854925..1865914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL14B4_RS09065 (LL14B4_09055) - 1856291..1857217 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  LL14B4_RS09070 (LL14B4_09060) - 1857371..1858054 (-) 684 WP_033899351.1 O-methyltransferase -
  LL14B4_RS09075 (LL14B4_09065) pepF 1858057..1859862 (-) 1806 WP_109991117.1 oligoendopeptidase F Regulator
  LL14B4_RS09080 (LL14B4_09070) coiA 1859925..1860914 (-) 990 WP_109991118.1 competence protein CoiA Machinery gene
  LL14B4_RS09085 (LL14B4_09075) - 1860988..1862073 (-) 1086 WP_012898312.1 YdcF family protein -
  LL14B4_RS09090 (LL14B4_09080) - 1862235..1863083 (-) 849 WP_010906111.1 alpha/beta hydrolase -
  LL14B4_RS09095 (LL14B4_09085) - 1863275..1864696 (-) 1422 WP_109991119.1 NCS2 family permease -
  LL14B4_RS09100 (LL14B4_09090) - 1865003..1865839 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39491.14 Da        Isoelectric Point: 8.9166

>NTDB_id=281815 LL14B4_RS09080 WP_109991118.1 1859925..1860914(-) (coiA) [Lactococcus lactis subsp. lactis strain 14B4]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYLPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGKGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=281815 LL14B4_RS09080 WP_109991118.1 1859925..1860914(-) (coiA) [Lactococcus lactis subsp. lactis strain 14B4]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATCTTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCTTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGAAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.46

99.088

0.748
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426
  coiA Streptococcus mitis NCTC 12261

43.26

96.96

0.419

Multiple sequence alignment