Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   C9I27_RS01630 Genome accession   NZ_CP028148
Coordinates   297575..298261 (+) Length   228 a.a.
NCBI ID   WP_002991052.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TJ11-001     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 292575..303261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I27_RS01605 ktrB 292717..294093 (-) 1377 WP_032459750.1 potassium uptake transporter channel subunit KtrB -
  C9I27_RS01610 rsmG 294178..294891 (-) 714 WP_002991057.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  C9I27_RS01615 - 295041..295598 (+) 558 WP_002985956.1 LemA family protein -
  C9I27_RS01620 htpX 295645..296541 (+) 897 WP_002985953.1 zinc metalloprotease HtpX -
  C9I27_RS01625 - 296775..297308 (+) 534 WP_011054200.1 DUF177 domain-containing protein -
  C9I27_RS01630 covR 297575..298261 (+) 687 WP_002991052.1 two-component system response regulator CovR Regulator
  C9I27_RS01635 covS 298267..299769 (+) 1503 WP_002991036.1 two-component system sensor histidine kinase CovS -
  C9I27_RS01640 nrdR 299984..300478 (+) 495 WP_002985941.1 transcriptional regulator NrdR -
  C9I27_RS01645 - 300462..301637 (+) 1176 WP_002991019.1 replication initiation and membrane attachment family protein -
  C9I27_RS01650 dnaI 301638..302540 (+) 903 WP_002991016.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26618.70 Da        Isoelectric Point: 4.6586

>NTDB_id=281682 C9I27_RS01630 WP_002991052.1 297575..298261(+) (covR) [Streptococcus pyogenes strain TJ11-001]
MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=281682 C9I27_RS01630 WP_002991052.1 297575..298261(+) (covR) [Streptococcus pyogenes strain TJ11-001]
ATGACAAAGAAGATTTTAATTATTGAAGATGAAAAGAATCTGGCTAGATTCGTTTCTCTTGAGCTGCAACATGAGGGTTA
TGAAGTCATTGTTGAGGTCAATGGTCGTGAAGGGTTAGAAACTGCTTTGGAAAAAGAGTTTGATTTAATCCTGCTTGACT
TAATGTTACCAGAGATGGATGGTTTTGAAGTGACCCGTCGTTTGCAAACCGAAAAAACAACGTATATCATGATGATGACT
GCGCGTGATTCTATTATGGATGTGGTTGCAGGTTTAGACCGCGGTGCAGACGACTATATTGTTAAACCGTTTGCCATTGA
AGAACTACTTGCCCGTATTCGTGCTATTTTCCGCCGTCAAGATATTGAATCTGAGAAGAAAGTGCCTAGTCAAGGCATTT
ATCGAGATCTAGTTTTAAATCCACAAAACCGTTCAGTTAATCGTGGCGACGATGAGATTTCTCTCACTAAACGTGAATAT
GATTTGCTTAATATTTTGATGACTAATATGAATCGTGTCATGACACGTGAAGAATTATTGTCAAATGTTTGGAAATATGA
TGAAGCTGTTGAGACTAATGTTGTAGATGTCTATATTCGTTATCTCCGCGGCAAAATTGACATTCCAGGCAAGGAATCTT
ATATCCAAACAGTGCGTGGCATGGGATACGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.966

100

0.447
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425

Multiple sequence alignment