Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   C4X49_RS16585 Genome accession   NZ_CP028138
Coordinates   3373412..3374230 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain NCIMB 8209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3368412..3379230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4X49_RS16570 (C4X49_16560) pilE 3368629..3369054 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  C4X49_RS16575 (C4X49_16565) pilY2 3369051..3369533 (-) 483 WP_001046416.1 type IV pilin protein Machinery gene
  C4X49_RS16580 (C4X49_16570) pilY1 3369546..3373400 (-) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  C4X49_RS16585 (C4X49_16575) pilX 3373412..3374230 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C4X49_RS16590 (C4X49_16580) pilW 3374227..3375228 (-) 1002 WP_002132301.1 PilW family protein Machinery gene
  C4X49_RS16595 (C4X49_16585) pilV 3375229..3375789 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  C4X49_RS16600 (C4X49_16590) fimU 3375783..3376256 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C4X49_RS16605 (C4X49_16595) ispH 3376426..3377376 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C4X49_RS16610 (C4X49_16600) gmk 3377499..3378128 (+) 630 WP_000015937.1 guanylate kinase -
  C4X49_RS16615 (C4X49_16605) rpoZ 3378201..3378479 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  C4X49_RS16620 (C4X49_16610) - 3378518..3378648 (+) 131 Protein_3227 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=281549 C4X49_RS16585 WP_000149374.1 3373412..3374230(-) (pilX) [Acinetobacter baumannii strain NCIMB 8209]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=281549 C4X49_RS16585 WP_000149374.1 3373412..3374230(-) (pilX) [Acinetobacter baumannii strain NCIMB 8209]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTCGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment