Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   C4X49_RS16590 Genome accession   NZ_CP028138
Coordinates   3374227..3375228 (-) Length   333 a.a.
NCBI ID   WP_002132301.1    Uniprot ID   A0AAX0TUC3
Organism   Acinetobacter baumannii strain NCIMB 8209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3369227..3380228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4X49_RS16580 (C4X49_16570) pilY1 3369546..3373400 (-) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  C4X49_RS16585 (C4X49_16575) pilX 3373412..3374230 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C4X49_RS16590 (C4X49_16580) pilW 3374227..3375228 (-) 1002 WP_002132301.1 PilW family protein Machinery gene
  C4X49_RS16595 (C4X49_16585) pilV 3375229..3375789 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  C4X49_RS16600 (C4X49_16590) fimU 3375783..3376256 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C4X49_RS16605 (C4X49_16595) ispH 3376426..3377376 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C4X49_RS16610 (C4X49_16600) gmk 3377499..3378128 (+) 630 WP_000015937.1 guanylate kinase -
  C4X49_RS16615 (C4X49_16605) rpoZ 3378201..3378479 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  C4X49_RS16620 (C4X49_16610) - 3378518..3378648 (+) 131 Protein_3227 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35846.52 Da        Isoelectric Point: 6.1010

>NTDB_id=281550 C4X49_RS16590 WP_002132301.1 3374227..3375228(-) (pilW) [Acinetobacter baumannii strain NCIMB 8209]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=281550 C4X49_RS16590 WP_002132301.1 3374227..3375228(-) (pilW) [Acinetobacter baumannii strain NCIMB 8209]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.399

100

0.994

Multiple sequence alignment