Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C7U63_RS13120 | Genome accession | NZ_CP028133 |
| Coordinates | 2846431..2847018 (+) | Length | 195 a.a. |
| NCBI ID | WP_005340181.1 | Uniprot ID | A0A165S798 |
| Organism | Aeromonas veronii strain 17ISAe | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2846431..2854879 | 2846431..2847018 | within | 0 |
Gene organization within MGE regions
Location: 2846431..2854879
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7U63_RS13120 (C7U63_13105) | ssb | 2846431..2847018 (+) | 588 | WP_005340181.1 | single-stranded DNA-binding protein | Machinery gene |
| C7U63_RS13125 (C7U63_13110) | - | 2847200..2848372 (+) | 1173 | WP_128313344.1 | site-specific integrase | - |
| C7U63_RS13130 (C7U63_13115) | - | 2848338..2849876 (+) | 1539 | WP_234829613.1 | tyrosine-type recombinase/integrase | - |
| C7U63_RS13135 (C7U63_13120) | - | 2849873..2851936 (+) | 2064 | WP_234829614.1 | integrase | - |
| C7U63_RS13140 (C7U63_13125) | - | 2851933..2852352 (+) | 420 | WP_005895563.1 | hypothetical protein | - |
| C7U63_RS13145 (C7U63_13130) | - | 2852349..2852855 (+) | 507 | WP_118854322.1 | hypothetical protein | - |
| C7U63_RS13150 (C7U63_13135) | - | 2852852..2854879 (+) | 2028 | WP_118854323.1 | AAA family ATPase | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 21583.11 Da Isoelectric Point: 5.9301
>NTDB_id=281479 C7U63_RS13120 WP_005340181.1 2846431..2847018(+) (ssb) [Aeromonas veronii strain 17ISAe]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
Nucleotide
Download Length: 588 bp
>NTDB_id=281479 C7U63_RS13120 WP_005340181.1 2846431..2847018(+) (ssb) [Aeromonas veronii strain 17ISAe]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGTGTTGTCTTCATGGGCAAGCTGGCAGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAAGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGTGTTGTCTTCATGGGCAAGCTGGCAGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAAGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
69.347 |
100 |
0.708 |
| ssb | Glaesserella parasuis strain SC1401 |
53.886 |
98.974 |
0.533 |
| ssb | Neisseria meningitidis MC58 |
46.597 |
97.949 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
46.842 |
97.436 |
0.456 |