Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GURA_RS22365 Genome accession   NC_009483
Coordinates   5096447..5096896 (+) Length   149 a.a.
NCBI ID   WP_011941166.1    Uniprot ID   -
Organism   Geotalea uraniireducens Rf4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5091447..5101896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GURA_RS22345 (Gura_4393) - 5093106..5094782 (-) 1677 WP_011941162.1 ribonuclease J -
  GURA_RS22350 (Gura_4394) - 5095007..5095405 (-) 399 WP_011941163.1 hypothetical protein -
  GURA_RS22355 (Gura_4395) - 5095413..5095595 (-) 183 WP_041246232.1 hypothetical protein -
  GURA_RS22360 (Gura_4396) - 5095600..5096298 (-) 699 WP_011941165.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  GURA_RS22365 (Gura_4397) ssb 5096447..5096896 (+) 450 WP_011941166.1 single-stranded DNA-binding protein Machinery gene
  GURA_RS25175 - 5097086..5097343 (+) 258 WP_268741733.1 GSU3128 family (seleno)protein -
  GURA_RS22370 (Gura_4400) - 5097356..5098708 (+) 1353 WP_041246233.1 MATE family efflux transporter -
  GURA_RS22375 (Gura_4401) - 5098813..5100900 (-) 2088 WP_011941170.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16304.07 Da        Isoelectric Point: 5.3320

>NTDB_id=28138 GURA_RS22365 WP_011941166.1 5096447..5096896(+) (ssb) [Geotalea uraniireducens Rf4]
MASLNKVMLIGNLGKDPEVRYTASGTAVASFSLATSEKFKNKSGEWEEKTEWHNVTLWARLAEIAGEYLSKGKTVYIEGR
LQTRKWQDRDGKDRYTTEIVGEKMQMLSGKGEGGGGGRQGGGRPSSDEHGGGGPSYEEPVFNPDDDIPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=28138 GURA_RS22365 WP_011941166.1 5096447..5096896(+) (ssb) [Geotalea uraniireducens Rf4]
ATGGCCAGTCTCAATAAAGTTATGCTGATAGGAAACCTCGGCAAGGACCCTGAAGTGCGTTACACCGCCTCAGGAACGGC
GGTTGCTAGTTTTTCCCTGGCAACCAGCGAGAAGTTCAAGAACAAGTCCGGTGAGTGGGAAGAGAAAACCGAGTGGCACA
ACGTCACCCTCTGGGCCCGCCTGGCGGAGATTGCCGGCGAATACCTGTCCAAAGGGAAGACCGTATATATCGAAGGACGC
CTTCAGACCCGCAAGTGGCAGGACCGTGACGGCAAAGACCGCTACACCACCGAGATCGTCGGGGAGAAGATGCAGATGCT
TTCCGGCAAGGGTGAAGGGGGCGGCGGTGGCCGCCAGGGTGGCGGCAGACCCAGCAGCGATGAGCACGGCGGCGGTGGCC
CGAGCTACGAAGAGCCGGTGTTCAATCCCGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.977

100

0.617
  ssb Glaesserella parasuis strain SC1401

45

100

0.544
  ssb Neisseria meningitidis MC58

44.509

100

0.517
  ssb Neisseria gonorrhoeae MS11

44.509

100

0.517

Multiple sequence alignment