Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C7R88_RS11210 Genome accession   NZ_CP027852
Coordinates   2491045..2491605 (+) Length   186 a.a.
NCBI ID   WP_039046679.1    Uniprot ID   A0A1A9B0G7
Organism   Plesiomonas shigelloides strain MS-17-188     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2486045..2496605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R88_RS11200 (C7R88_11185) - 2486700..2487830 (+) 1131 WP_218279037.1 pyridoxal-phosphate-dependent aminotransferase family protein -
  C7R88_RS11205 (C7R88_11190) uvrA 2487930..2490785 (-) 2856 WP_106911613.1 excinuclease ABC subunit UvrA -
  C7R88_RS11210 (C7R88_11195) ssb 2491045..2491605 (+) 561 WP_039046679.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20319.38 Da        Isoelectric Point: 5.0019

>NTDB_id=280953 C7R88_RS11210 WP_039046679.1 2491045..2491605(+) (ssb) [Plesiomonas shigelloides strain MS-17-188]
MARGGINKVILIGNLGQDPEVRYMPNGNAVANISIATSESWRDKNTGEQKEMTEWHRVVLYRRLAEVAGEYLKKGAKVYI
EGKLRTRKWQDQNGQERYSTEIQADEMQMLDSRGGMGAPAGQSQGGWGQPQQPQNQGFAPQQSQGNYGNAPAQGGYANNT
PNAAPANNAGFGSAEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=280953 C7R88_RS11210 WP_039046679.1 2491045..2491605(+) (ssb) [Plesiomonas shigelloides strain MS-17-188]
ATGGCCAGAGGTGGCATTAACAAAGTTATCCTGATCGGTAATTTGGGGCAGGACCCTGAAGTACGCTACATGCCGAACGG
TAATGCTGTCGCTAATATCAGCATCGCGACCTCTGAAAGCTGGCGCGACAAGAATACCGGCGAGCAAAAAGAGATGACTG
AATGGCACCGTGTTGTGCTGTACCGTCGTCTGGCAGAAGTCGCGGGTGAATACCTGAAGAAAGGTGCCAAGGTTTACATT
GAAGGTAAACTGCGTACCCGTAAATGGCAGGATCAGAACGGCCAAGAGCGTTACAGCACCGAAATCCAAGCCGATGAGAT
GCAAATGCTGGATTCCCGTGGCGGCATGGGCGCACCGGCAGGCCAATCACAAGGCGGTTGGGGTCAACCACAGCAGCCAC
AAAACCAAGGGTTTGCTCCACAGCAGTCCCAAGGTAACTACGGCAATGCCCCAGCGCAAGGCGGCTACGCCAACAATACC
CCGAATGCGGCACCAGCGAACAACGCCGGTTTCGGTAGCGCTGAGCCTCCAATGGATTTTGATGACGACATTCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9B0G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.307

100

0.656
  ssb Glaesserella parasuis strain SC1401

57.979

100

0.586
  ssb Neisseria meningitidis MC58

48.634

98.387

0.478
  ssb Neisseria gonorrhoeae MS11

48.634

98.387

0.478

Multiple sequence alignment