Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B7G68_RS09985 Genome accession   NZ_CP027850
Coordinates   2116904..2117407 (+) Length   167 a.a.
NCBI ID   WP_106907146.1    Uniprot ID   -
Organism   Caulobacter segnis strain TK0059     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2111904..2122407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7G68_RS09965 (B7G68_09965) pseH 2112053..2112607 (+) 555 WP_013079072.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  B7G68_RS09970 (B7G68_09970) - 2112687..2115554 (+) 2868 WP_013079073.1 hypothetical protein -
  B7G68_RS09975 (B7G68_09975) - 2115645..2116337 (+) 693 WP_013079074.1 hypothetical protein -
  B7G68_RS09980 (B7G68_09980) - 2116355..2116756 (+) 402 WP_013079075.1 hypothetical protein -
  B7G68_RS09985 (B7G68_09985) ssb 2116904..2117407 (+) 504 WP_106907146.1 single-stranded DNA-binding protein Machinery gene
  B7G68_RS09990 (B7G68_09990) - 2117578..2118267 (+) 690 WP_013079077.1 hypothetical protein -
  B7G68_RS09995 (B7G68_09995) ppdK 2118843..2121530 (+) 2688 WP_013079078.1 pyruvate, phosphate dikinase -
  B7G68_RS10000 (B7G68_10000) - 2121626..2122285 (+) 660 WP_013079079.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17939.71 Da        Isoelectric Point: 5.3415

>NTDB_id=280933 B7G68_RS09985 WP_106907146.1 2116904..2117407(+) (ssb) [Caulobacter segnis strain TK0059]
MAGSVNKVILVGNLGADPEIRSLGSGDRVANLRIATSETWRDRNSGERKEKTEWHRVVIFNDNLVKVAEQYLKKGSTVYI
EGALQTRKWTDNTGQEKYSTEIVLQKFRGELTMLGGRGDSAGASSGGGDEYGGGYSGGGSSFGGGQRSQPSGPRESFSAD
LDDEIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=280933 B7G68_RS09985 WP_106907146.1 2116904..2117407(+) (ssb) [Caulobacter segnis strain TK0059]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTGGGCAATCTCGGGGCCGATCCCGAGATCCGTAGCCTGGGTTCCGGCGA
CCGCGTCGCCAATCTCCGTATCGCCACGTCGGAAACCTGGCGCGACCGCAACAGCGGCGAGCGCAAGGAGAAGACCGAAT
GGCACCGGGTCGTCATCTTCAACGACAACCTGGTGAAGGTGGCCGAGCAGTACCTCAAGAAGGGCTCGACCGTTTACATC
GAAGGCGCGCTTCAGACCCGCAAGTGGACTGACAACACCGGCCAGGAAAAGTACTCGACCGAAATCGTGCTGCAGAAATT
CCGCGGCGAGCTGACCATGCTGGGCGGCCGCGGCGACAGCGCCGGCGCGTCTTCGGGCGGCGGCGACGAGTACGGCGGCG
GCTATTCGGGCGGCGGCTCCAGCTTTGGCGGCGGCCAGCGCAGCCAACCGAGCGGTCCGCGCGAGAGCTTCTCGGCCGAC
CTGGACGACGAAATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.289

100

0.521
  ssb Glaesserella parasuis strain SC1401

46.448

100

0.509
  ssb Neisseria meningitidis MC58

41.758

100

0.455
  ssb Neisseria gonorrhoeae MS11

40.761

100

0.449

Multiple sequence alignment