Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C7J88_RS07130 Genome accession   NZ_CP027848
Coordinates   1430232..1430741 (-) Length   169 a.a.
NCBI ID   WP_095118073.1    Uniprot ID   A0A240C9Y3
Organism   Staphylococcus muscae strain ATCC 49910     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1425232..1435741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7J88_RS07105 (C7J88_07080) - 1426290..1427681 (-) 1392 WP_095118069.1 MFS transporter -
  C7J88_RS10645 (C7J88_07090) - 1428843..1429361 (-) 519 WP_159031410.1 Abi family protein -
  C7J88_RS10660 (C7J88_07095) - 1429391..1429780 (-) 390 WP_095118072.1 Abi family protein -
  C7J88_RS07125 (C7J88_07100) rpsR 1429938..1430180 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  C7J88_RS07130 (C7J88_07105) ssbA 1430232..1430741 (-) 510 WP_095118073.1 single-stranded DNA-binding protein Machinery gene
  C7J88_RS07135 (C7J88_07110) rpsF 1430767..1431063 (-) 297 WP_044360075.1 30S ribosomal protein S6 -
  C7J88_RS07140 (C7J88_07115) ychF 1431345..1432442 (-) 1098 WP_095118074.1 redox-regulated ATPase YchF -
  C7J88_RS07145 (C7J88_07120) - 1432442..1432654 (-) 213 WP_095118075.1 DUF951 domain-containing protein -
  C7J88_RS07150 (C7J88_07125) - 1432679..1433563 (-) 885 WP_095118076.1 mechanosensitive ion channel family protein -
  C7J88_RS07155 (C7J88_07130) - 1433593..1434405 (-) 813 WP_095118077.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18811.51 Da        Isoelectric Point: 5.7486

>NTDB_id=280921 C7J88_RS07130 WP_095118073.1 1430232..1430741(-) (ssbA) [Staphylococcus muscae strain ATCC 49910]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSANQRHAQNSPNHGNDFQSYGQSFGGQQQGQNSSYQNNQPARNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=280921 C7J88_RS07130 WP_095118073.1 1430232..1430741(-) (ssbA) [Staphylococcus muscae strain ATCC 49910]
ATGATTAACAGAGTTGTATTAGTAGGTCGATTAACAAAAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTCGCAGTGAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGATTTTATTAACTGCGTTGTTT
TCCGTAAACAAGCTGAGAATGTTAATAATTTCTTATTCAAAGGTAGCCTTGCAGGTGTTGATGGTCGCTTACAGTCACGC
AGTTATGAAAACCAAGAAGGCCGACGCGTCTATGTTACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAGCCAAAATC
AGCGAATCAACGACACGCACAAAATAGTCCAAACCATGGAAATGACTTCCAAAGTTATGGACAAAGTTTCGGTGGACAAC
AGCAAGGCCAAAATTCGTCATATCAAAACAATCAGCCAGCACGCAATGATAACCCATTTGCGAATGCGAACGGGCCAATA
GACATTAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240C9Y3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.068

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

58.382

100

0.598
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.722

0.385
  ssb Glaesserella parasuis strain SC1401

34.595

100

0.379

Multiple sequence alignment