Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | C7M55_RS01865 | Genome accession | NZ_CP027788 |
| Coordinates | 387245..387715 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain CMRSA-6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 376659..419156 | 387245..387715 | within | 0 |
Gene organization within MGE regions
Location: 376659..419156
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7M55_RS01780 (C7M55_01780) | - | 376659..377864 (-) | 1206 | WP_000264186.1 | tyrosine-type recombinase/integrase | - |
| C7M55_RS01785 (C7M55_01785) | - | 377975..378154 (+) | 180 | WP_000337826.1 | hypothetical protein | - |
| C7M55_RS01790 (C7M55_01790) | - | 378134..379066 (-) | 933 | WP_000392181.1 | hypothetical protein | - |
| C7M55_RS01795 (C7M55_01795) | - | 379098..379823 (-) | 726 | WP_000661437.1 | PH domain-containing protein | - |
| C7M55_RS01800 (C7M55_01800) | - | 379851..380525 (-) | 675 | WP_000775187.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C7M55_RS01805 (C7M55_01805) | - | 380542..380874 (-) | 333 | WP_001055143.1 | helix-turn-helix transcriptional regulator | - |
| C7M55_RS01810 (C7M55_01810) | - | 381138..381332 (+) | 195 | WP_000108122.1 | helix-turn-helix transcriptional regulator | - |
| C7M55_RS01815 (C7M55_01815) | - | 381332..382099 (+) | 768 | WP_001002757.1 | phage antirepressor Ant | - |
| C7M55_RS01820 (C7M55_01820) | - | 382100..382324 (+) | 225 | WP_000187184.1 | hypothetical protein | - |
| C7M55_RS16250 | - | 382364..382462 (+) | 99 | Protein_344 | hypothetical protein | - |
| C7M55_RS01830 (C7M55_01830) | - | 382612..382875 (+) | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| C7M55_RS01835 (C7M55_01835) | - | 382887..383048 (+) | 162 | WP_000066021.1 | DUF1270 family protein | - |
| C7M55_RS01840 (C7M55_01840) | - | 383140..383400 (+) | 261 | WP_000291089.1 | DUF1108 family protein | - |
| C7M55_RS01845 (C7M55_01845) | - | 383409..383672 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| C7M55_RS01850 (C7M55_01850) | - | 383681..385624 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| C7M55_RS01855 (C7M55_01855) | - | 385626..386546 (+) | 921 | WP_000180598.1 | recombinase RecT | - |
| C7M55_RS01860 (C7M55_01860) | - | 386627..387244 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| C7M55_RS01865 (C7M55_01865) | ssbA | 387245..387715 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| C7M55_RS01870 (C7M55_01870) | - | 387745..388638 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| C7M55_RS01875 (C7M55_01875) | - | 388645..388863 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| C7M55_RS01880 (C7M55_01880) | - | 388872..389276 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C7M55_RS01885 (C7M55_01885) | - | 389289..389661 (+) | 373 | Protein_356 | SA1788 family PVL leukocidin-associated protein | - |
| C7M55_RS01890 (C7M55_01890) | - | 389661..389918 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| C7M55_RS01895 (C7M55_01895) | - | 389915..390163 (+) | 249 | WP_000178986.1 | SAV1978 family virulence-associated passenger protein | - |
| C7M55_RS01900 (C7M55_01900) | - | 390176..390577 (+) | 402 | WP_000695762.1 | hypothetical protein | - |
| C7M55_RS01905 (C7M55_01905) | - | 390574..390921 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| C7M55_RS01910 (C7M55_01910) | - | 390918..391226 (+) | 309 | WP_000144710.1 | hypothetical protein | - |
| C7M55_RS01915 (C7M55_01915) | - | 391219..391467 (+) | 249 | WP_001065026.1 | DUF1024 family protein | - |
| C7M55_RS01920 (C7M55_01920) | - | 391460..391996 (+) | 537 | WP_000185663.1 | dUTPase | - |
| C7M55_RS01925 (C7M55_01925) | - | 392033..392233 (+) | 201 | WP_000195821.1 | DUF1381 domain-containing protein | - |
| C7M55_RS01930 (C7M55_01930) | - | 392332..392568 (+) | 237 | WP_000608279.1 | hypothetical protein | - |
| C7M55_RS01935 (C7M55_01935) | - | 392561..392734 (+) | 174 | WP_000591891.1 | transcriptional activator RinB | - |
| C7M55_RS01940 (C7M55_01940) | - | 392735..393100 (+) | 366 | WP_000989954.1 | hypothetical protein | - |
| C7M55_RS01945 (C7M55_01945) | - | 393101..393247 (+) | 147 | WP_000989960.1 | hypothetical protein | - |
| C7M55_RS01950 (C7M55_01950) | - | 393271..393711 (+) | 441 | WP_000162703.1 | RinA family phage transcriptional activator | - |
| C7M55_RS16150 (C7M55_01955) | - | 394022..394516 (+) | 495 | WP_000594082.1 | terminase small subunit | - |
| C7M55_RS01960 (C7M55_01960) | - | 394509..395717 (+) | 1209 | WP_001606760.1 | PBSX family phage terminase large subunit | - |
| C7M55_RS01965 (C7M55_01965) | - | 395731..397149 (+) | 1419 | WP_000283553.1 | phage portal protein | - |
| C7M55_RS01970 (C7M55_01970) | - | 397088..398071 (+) | 984 | WP_014532414.1 | phage head morphogenesis protein | - |
| C7M55_RS01975 (C7M55_01975) | - | 398073..398279 (+) | 207 | WP_000346033.1 | hypothetical protein | - |
| C7M55_RS01980 (C7M55_01980) | - | 398384..398980 (+) | 597 | WP_000366932.1 | phage scaffolding protein | - |
| C7M55_RS01985 (C7M55_01985) | - | 399001..399825 (+) | 825 | WP_001135558.1 | N4-gp56 family major capsid protein | - |
| C7M55_RS01990 (C7M55_01990) | - | 399842..400168 (+) | 327 | WP_000278799.1 | Rho termination factor N-terminal domain-containing protein | - |
| C7M55_RS01995 (C7M55_01995) | - | 400168..400482 (+) | 315 | WP_000338935.1 | phage head-tail connector protein | - |
| C7M55_RS02000 (C7M55_02000) | - | 400475..400810 (+) | 336 | WP_017431444.1 | phage head closure protein | - |
| C7M55_RS02005 (C7M55_02005) | - | 400797..401210 (+) | 414 | WP_001151335.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| C7M55_RS02010 (C7M55_02010) | - | 401223..401660 (+) | 438 | WP_044116368.1 | DUF3168 domain-containing protein | - |
| C7M55_RS02015 (C7M55_02015) | - | 401647..402207 (+) | 561 | WP_000046067.1 | hypothetical protein | - |
| C7M55_RS02020 (C7M55_02020) | - | 402269..402763 (+) | 495 | WP_000141082.1 | tail assembly chaperone | - |
| C7M55_RS02025 (C7M55_02025) | - | 402784..403125 (+) | 342 | WP_001580347.1 | hypothetical protein | - |
| C7M55_RS02030 (C7M55_02030) | - | 403128..406097 (+) | 2970 | WP_000414234.1 | terminase | - |
| C7M55_RS02035 (C7M55_02035) | - | 406112..407047 (+) | 936 | WP_000560193.1 | phage tail domain-containing protein | - |
| C7M55_RS02040 (C7M55_02040) | - | 407058..408941 (+) | 1884 | WP_001144702.1 | SGNH/GDSL hydrolase family protein | - |
| C7M55_RS02045 (C7M55_02045) | - | 408954..410852 (+) | 1899 | WP_000323252.1 | hypothetical protein | - |
| C7M55_RS02050 (C7M55_02050) | - | 410852..412675 (+) | 1824 | WP_000259636.1 | BppU family phage baseplate upper protein | - |
| C7M55_RS02055 (C7M55_02055) | - | 412675..413052 (+) | 378 | WP_000869363.1 | DUF2977 domain-containing protein | - |
| C7M55_RS02060 (C7M55_02060) | - | 413062..413235 (+) | 174 | WP_015990323.1 | XkdX family protein | - |
| C7M55_RS02065 (C7M55_02065) | - | 413276..413575 (+) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| C7M55_RS02070 (C7M55_02070) | - | 413712..415586 (+) | 1875 | WP_000524040.1 | glucosaminidase domain-containing protein | - |
| C7M55_RS02075 (C7M55_02075) | - | 415599..416837 (+) | 1239 | WP_000276640.1 | BppU family phage baseplate upper protein | - |
| C7M55_RS02080 (C7M55_02080) | - | 416842..417237 (+) | 396 | WP_000387945.1 | hypothetical protein | - |
| C7M55_RS02085 (C7M55_02085) | - | 417293..417730 (+) | 438 | WP_000354132.1 | phage holin | - |
| C7M55_RS02090 (C7M55_02090) | - | 417711..419156 (+) | 1446 | WP_001148131.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=280665 C7M55_RS01865 WP_000934759.1 387245..387715(+) (ssbA) [Staphylococcus aureus strain CMRSA-6]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=280665 C7M55_RS01865 WP_000934759.1 387245..387715(+) (ssbA) [Staphylococcus aureus strain CMRSA-6]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |