Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DNO_RS05410 Genome accession   NC_009446
Coordinates   1140668..1141051 (-) Length   127 a.a.
NCBI ID   WP_012031401.1    Uniprot ID   A5EXP4
Organism   Dichelobacter nodosus VCS1703A     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1135668..1146051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNO_RS05395 (DNO_1094) - 1138426..1139736 (-) 1311 WP_012031398.1 methyl-accepting chemotaxis protein -
  DNO_RS05400 (DNO_1095) - 1139751..1140272 (-) 522 WP_012031399.1 chemotaxis protein CheW -
  DNO_RS05405 (DNO_1096) - 1140269..1140631 (-) 363 WP_012031400.1 PleD family two-component system response regulator -
  DNO_RS05410 (DNO_1097) pilG 1140668..1141051 (-) 384 WP_012031401.1 PleD family two-component system response regulator Regulator
  DNO_RS05415 (DNO_1098) ruvX 1141153..1141542 (-) 390 WP_012031402.1 Holliday junction resolvase RuvX -
  DNO_RS05420 (DNO_1099) trxB 1141636..1142583 (+) 948 WP_012031403.1 thioredoxin-disulfide reductase -
  DNO_RS05425 (DNO_1100) lpdA 1142610..1144358 (+) 1749 WP_012031404.1 dihydrolipoyl dehydrogenase -
  DNO_RS05430 (DNO_1101) asd 1144443..1145276 (+) 834 WP_012031405.1 archaetidylserine decarboxylase -
  DNO_RS05435 (DNO_1102) rnhA 1145257..1145709 (+) 453 WP_012031406.1 ribonuclease HI -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13966.18 Da        Isoelectric Point: 6.7197

>NTDB_id=28054 DNO_RS05410 WP_012031401.1 1140668..1141051(-) (pilG) [Dichelobacter nodosus VCS1703A]
MAEASQSVKILIVDDSGTIRKTAEAILGKEGFQVATAEDGFAAFSKIIEFSPSIIFLDIMMPRLDGYQVCSVIKSNPEYK
NIPVIMLSSKDSVFDKARGKIAGSEHFMTKPFSRDELLKAIQVHATH

Nucleotide


Download         Length: 384 bp        

>NTDB_id=28054 DNO_RS05410 WP_012031401.1 1140668..1141051(-) (pilG) [Dichelobacter nodosus VCS1703A]
GTGGCTGAAGCAAGTCAATCAGTAAAGATACTCATCGTAGATGATAGTGGTACGATCAGGAAAACCGCCGAAGCAATCTT
GGGGAAAGAGGGTTTTCAAGTTGCAACGGCAGAAGACGGGTTTGCGGCGTTTTCAAAAATTATTGAGTTTTCTCCGAGCA
TCATTTTCCTCGATATTATGATGCCGCGACTTGATGGGTACCAAGTGTGCTCCGTGATTAAAAGTAATCCAGAGTATAAA
AATATTCCGGTGATTATGTTATCAAGTAAGGATAGTGTGTTCGATAAAGCGCGTGGAAAAATCGCAGGTTCGGAACATTT
CATGACAAAACCTTTTTCTCGCGACGAATTATTAAAAGCAATTCAGGTTCATGCTACACACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A5EXP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.73

99.213

0.583
  vicR Streptococcus mutans UA159

45.69

91.339

0.417
  pilH Synechocystis sp. PCC 6803

45.133

88.976

0.402
  micA Streptococcus pneumoniae Cp1015

42.202

85.827

0.362

Multiple sequence alignment