Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DNO_RS00595 Genome accession   NC_009446
Coordinates   130243..130752 (+) Length   169 a.a.
NCBI ID   WP_011927877.1    Uniprot ID   -
Organism   Dichelobacter nodosus VCS1703A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 125243..135752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNO_RS00565 (DNO_0119) - 126671..126931 (-) 261 WP_011927870.1 HPr family phosphocarrier protein -
  DNO_RS00570 (DNO_0120) - 127079..127861 (+) 783 WP_011927871.1 HAD family hydrolase -
  DNO_RS00575 (DNO_0121) - 127899..128240 (+) 342 WP_123962250.1 hypothetical protein -
  DNO_RS06920 (DNO_0122) - 128249..128410 (-) 162 WP_011927873.1 transporter substrate-binding domain-containing protein -
  DNO_RS00580 - 128426..128644 (-) 219 WP_123962251.1 hypothetical protein -
  DNO_RS00585 (DNO_0123) - 128596..128976 (-) 381 WP_041729366.1 transporter substrate-binding domain-containing protein -
  DNO_RS00590 (DNO_0125) - 129189..130178 (+) 990 WP_011927876.1 YheT family hydrolase -
  DNO_RS00595 (DNO_0126) ssb 130243..130752 (+) 510 WP_011927877.1 single-stranded DNA-binding protein Machinery gene
  DNO_RS00600 (DNO_0127) - 130841..131875 (-) 1035 WP_011927878.1 TAXI family TRAP transporter solute-binding subunit -
  DNO_RS00605 (DNO_0128) - 131888..132634 (-) 747 WP_011927879.1 murein L,D-transpeptidase family protein -
  DNO_RS00610 (DNO_0129) dacB 132631..134025 (-) 1395 WP_119185606.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  DNO_RS00615 (DNO_0130) yjgA 134168..134725 (+) 558 WP_011927881.1 ribosome biogenesis factor YjgA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19158.30 Da        Isoelectric Point: 5.0499

>NTDB_id=28045 DNO_RS00595 WP_011927877.1 130243..130752(+) (ssb) [Dichelobacter nodosus VCS1703A]
MAGVNKVILVGNVGQNPDVRVMTNGEQVANFSLATSMNWNDRQTGEKREKTEWHRCVAYRRLAEIIGQYVRKGSKLYIEG
RLETRKWQDQNGIDRYTTEIIVNEMQMLDSRNSSSEPYDYQAQKPQTENVYSAAPSKPQKPAARPAPMPSSPDYGPDGAF
DDPDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=28045 DNO_RS00595 WP_011927877.1 130243..130752(+) (ssb) [Dichelobacter nodosus VCS1703A]
ATGGCTGGGGTGAATAAAGTAATTTTGGTTGGCAATGTGGGGCAAAATCCCGATGTGCGCGTAATGACCAATGGCGAACA
AGTGGCAAATTTTTCTTTGGCAACCAGCATGAATTGGAACGACCGGCAAACCGGCGAAAAACGCGAAAAAACAGAATGGC
ATCGTTGCGTTGCCTACCGTCGTCTCGCGGAAATCATCGGGCAATACGTCAGAAAAGGCAGCAAATTATATATTGAAGGA
CGATTGGAAACACGCAAATGGCAAGATCAAAACGGCATTGATCGTTACACCACCGAAATCATCGTCAACGAAATGCAAAT
GCTCGATTCAAGAAATAGCAGCAGTGAACCCTACGATTATCAAGCGCAAAAACCGCAAACAGAAAACGTGTATTCTGCCG
CACCATCAAAACCACAAAAACCTGCCGCGCGTCCGGCGCCGATGCCGTCATCGCCGGATTATGGTCCTGATGGCGCTTTT
GATGATCCCGATGATGAAATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.532

100

0.562
  ssb Vibrio cholerae strain A1552

47.727

100

0.497
  ssb Neisseria meningitidis MC58

46.927

100

0.497
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.485

Multiple sequence alignment