Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   C7H83_RS05375 Genome accession   NZ_CP027768
Coordinates   1076563..1077267 (-) Length   234 a.a.
NCBI ID   WP_103892232.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain LMG 26042     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1071563..1082267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H83_RS05355 (C7H83_05365) - 1072469..1072831 (+) 363 WP_103892235.1 hypothetical protein -
  C7H83_RS05360 (C7H83_05370) - 1073019..1074341 (-) 1323 WP_103892234.1 IS1380 family transposase -
  C7H83_RS05365 (C7H83_05375) - 1074775..1075074 (-) 300 WP_227869125.1 LOG family protein -
  C7H83_RS05370 (C7H83_05380) - 1075149..1076561 (-) 1413 WP_103892233.1 sensor histidine kinase KdpD -
  C7H83_RS05375 (C7H83_05385) scnR 1076563..1077267 (-) 705 WP_103892232.1 response regulator transcription factor Regulator
  C7H83_RS13785 - 1077420..1077605 (+) 186 WP_157978073.1 ATP-binding cassette domain-containing protein -
  C7H83_RS05380 (C7H83_05390) - 1077638..1078177 (+) 540 WP_407830091.1 ATP-binding cassette domain-containing protein -
  C7H83_RS05385 (C7H83_05395) - 1078170..1078883 (+) 714 WP_103892231.1 ABC transporter permease -
  C7H83_RS05390 (C7H83_05400) - 1078880..1079647 (+) 768 WP_103892230.1 ABC transporter permease -
  C7H83_RS05395 (C7H83_05405) - 1079655..1079930 (+) 276 WP_103892229.1 hypothetical protein -
  C7H83_RS05400 (C7H83_05410) - 1080020..1080613 (+) 594 WP_103892228.1 TetR/AcrR family transcriptional regulator -
  C7H83_RS05405 (C7H83_05415) - 1080627..1081154 (+) 528 WP_103892227.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26602.84 Da        Isoelectric Point: 4.5474

>NTDB_id=280369 C7H83_RS05375 WP_103892232.1 1076563..1077267(-) (scnR) [Tetragenococcus halophilus strain LMG 26042]
MSEDYLKKKKILIVDDEPELLEMVISFLKEEGFEQIATADTVEKAIQTVQSMPPDLAILDVMLPDGDGFSLMKKVQQIAD
FPTFFLTARGEDTDRLTGLGLGADDYLVKPFLPKELVFRVLAILRRTYKEEVTLIQLKDCQIDFDRAEIVKEQEILSLTA
KEYNLLNTLYRNTGRIVTIDALCEAVWGENPFGYENTLMAHIRRIRQKIEKQPSNPASLITVKGLGYKLVVEEA

Nucleotide


Download         Length: 705 bp        

>NTDB_id=280369 C7H83_RS05375 WP_103892232.1 1076563..1077267(-) (scnR) [Tetragenococcus halophilus strain LMG 26042]
ATGAGTGAAGATTACTTAAAAAAGAAAAAGATCTTAATTGTAGATGATGAACCAGAACTATTAGAAATGGTGATTTCATT
TTTAAAAGAAGAAGGTTTTGAACAAATAGCCACTGCCGACACAGTGGAAAAAGCGATCCAAACTGTCCAATCGATGCCGC
CTGATTTAGCAATTTTAGATGTCATGTTACCCGATGGCGATGGTTTTTCACTTATGAAGAAAGTACAACAAATTGCGGAT
TTTCCTACCTTCTTTTTAACTGCACGTGGAGAGGATACAGATCGACTCACAGGATTGGGCTTAGGTGCAGATGATTATTT
AGTAAAACCTTTTTTACCCAAAGAACTCGTTTTTAGGGTGTTAGCTATTCTCAGGAGAACATACAAAGAGGAAGTAACTT
TGATACAGTTAAAAGACTGTCAAATTGACTTTGATCGTGCAGAAATCGTCAAAGAACAAGAAATTCTTTCATTAACAGCC
AAAGAATATAATTTACTAAATACATTGTACCGAAATACGGGGCGTATTGTGACTATCGATGCTTTATGCGAGGCGGTTTG
GGGAGAGAATCCGTTTGGTTATGAAAATACATTGATGGCACATATTCGACGAATTCGTCAAAAAATAGAAAAGCAGCCTT
CCAATCCTGCTTCGCTGATTACGGTTAAAGGATTAGGCTACAAGCTGGTTGTAGAGGAGGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-119)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.667

96.154

0.487
  vicR Streptococcus mutans UA159

38.528

98.718

0.38
  micA Streptococcus pneumoniae Cp1015

38.261

98.291

0.376

Multiple sequence alignment