Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4J83_RS27030 Genome accession   NZ_CP027762
Coordinates   5824554..5825081 (-) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas sp. LBUM920     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5819554..5830081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J83_RS27005 (C4J83_5355) - 5819692..5820447 (-) 756 WP_106580222.1 S9 family peptidase -
  C4J83_RS27010 (C4J83_5356) - 5820437..5821546 (-) 1110 WP_124418568.1 DUF3182 family protein -
  C4J83_RS27015 (C4J83_5357) - 5821786..5822349 (+) 564 WP_124418569.1 cysteine hydrolase family protein -
  C4J83_RS27020 (C4J83_5358) tam 5822371..5823132 (-) 762 WP_124418570.1 trans-aconitate 2-methyltransferase -
  C4J83_RS27025 (C4J83_5359) - 5823235..5824143 (+) 909 WP_124418571.1 LysR family transcriptional regulator -
  C4J83_RS27030 (C4J83_5360) ssb 5824554..5825081 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  C4J83_RS27035 (C4J83_5361) - 5825091..5826485 (-) 1395 WP_106580217.1 MFS transporter -
  C4J83_RS27040 (C4J83_5362) uvrA 5826664..5829498 (+) 2835 WP_124418572.1 excinuclease ABC subunit UvrA -
  C4J83_RS27045 (C4J83_5363) bfr 5829564..5830028 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=280324 C4J83_RS27030 WP_010467282.1 5824554..5825081(-) (ssb) [Pseudomonas sp. LBUM920]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=280324 C4J83_RS27030 WP_010467282.1 5824554..5825081(-) (ssb) [Pseudomonas sp. LBUM920]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACTGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGCGAGTACTTGCGTAAAGGTTCGCAGGTTTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACAGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAACAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGTCCGCAGCAGTCGGCACCGCAGCAATCGCGTCAGGCACCACCTCCACAACAGGCCGCTCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491

Multiple sequence alignment