Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4K03_RS19140 Genome accession   NZ_CP027754
Coordinates   4133008..4135233 (-) Length   741 a.a.
NCBI ID   WP_124378419.1    Uniprot ID   A0A3G7U9P0
Organism   Pseudomonas synxantha strain 30B     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4128008..4140233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K03_RS19105 (C4K03_3802) murB 4128377..4129396 (-) 1020 WP_124378416.1 UDP-N-acetylmuramate dehydrogenase -
  C4K03_RS19110 (C4K03_3803) - 4129393..4129857 (-) 465 WP_124378417.1 low molecular weight protein-tyrosine-phosphatase -
  C4K03_RS19115 (C4K03_3804) kdsB 4129857..4130621 (-) 765 WP_057014425.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K03_RS19120 (C4K03_3805) - 4130618..4130803 (-) 186 WP_003174668.1 Trm112 family protein -
  C4K03_RS19125 (C4K03_3806) lpxK 4130828..4131838 (-) 1011 WP_124378418.1 tetraacyldisaccharide 4'-kinase -
  C4K03_RS19130 (C4K03_3807) - 4131838..4132266 (-) 429 WP_043046643.1 biopolymer transporter ExbD -
  C4K03_RS19135 (C4K03_3808) exbB 4132263..4132898 (-) 636 WP_046068614.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K03_RS19140 (C4K03_3809) comA 4133008..4135233 (-) 2226 WP_124378419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K03_RS19145 (C4K03_3810) - 4135369..4135884 (+) 516 WP_043046639.1 DUF2062 domain-containing protein -
  C4K03_RS19150 (C4K03_3811) - 4135889..4137247 (-) 1359 WP_124380167.1 sensor histidine kinase -
  C4K03_RS19155 (C4K03_3812) - 4137234..4137962 (-) 729 WP_124378420.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80243.21 Da        Isoelectric Point: 10.7596

>NTDB_id=280123 C4K03_RS19140 WP_124378419.1 4133008..4135233(-) (comA) [Pseudomonas synxantha strain 30B]
MKTAMLALALGLLALRWLPALPPGALVLAMLVLALMLLPFRTYPVAFFLVGLSWACISAQRALDDRLRPVLDGQTRWVEG
RVIGLPQQTGTSVRFELADSRSRTAPLPKRIRVSWHGGPTVNSGERWRLALTLKRPAGLLNFHGFDHEAWLLAQRTGATA
TVKDGERLAPARNAWRDAVRQRLLAVDAQGREAGLAALVLGDGSGLTPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IALLARHGCWPRTWPWLPWACGLAFAGALAYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNAVLMLEPL
ASLQPGFWLSFAAVAALVLAFSGRLGPWSPWQVWTRPQWLIAIGLFPLLLVLGLPISLSAPVANLVAVPWISLVVLPLAL
LGTALLWVPLAGDGLLWLAGGALDGLFKGLALLAVRLPAWIPAEVPLGYWLVSLAGAVILLLPKGLPFRLLGWPMLLLAV
FPPRESIPHGQVDVVQLDVGQGQALILRTRHHSLLYDAGPRSGPVDQGARVVLPSLKKLGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPGFLGTQPCNSGERWEWDGVAFELWQWAGASDGNPRSCVLQVEANGERLLLTGDIDRAAE
RAFLASPLAVPTDWLQAPHHGSRSSSSWPFLQRLAPASVLISRGRSNAFGHPHPQVMERYQALGSRVYDSAEQGAVRLRL
GTFLPPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=280123 C4K03_RS19140 WP_124378419.1 4133008..4135233(-) (comA) [Pseudomonas synxantha strain 30B]
ATGAAAACAGCGATGTTGGCCTTGGCGCTGGGGTTACTGGCGTTGCGTTGGTTACCTGCGTTGCCGCCCGGCGCATTGGT
GTTGGCCATGTTGGTGCTGGCGTTGATGCTGCTGCCTTTTCGCACCTATCCCGTGGCTTTCTTCCTGGTGGGGTTGAGTT
GGGCCTGTATCAGTGCGCAGCGGGCGCTGGATGACCGCTTGCGGCCGGTGCTGGACGGGCAGACGCGCTGGGTTGAGGGG
CGTGTCATCGGCCTGCCGCAGCAGACGGGCACGAGCGTGCGCTTCGAACTGGCCGACAGCCGGTCGCGCACTGCACCGCT
GCCCAAGCGCATTCGCGTGTCCTGGCACGGCGGGCCCACGGTTAACAGCGGGGAGCGCTGGCGCCTGGCATTGACGCTGA
AGCGGCCTGCCGGCCTGCTTAATTTCCACGGGTTTGACCATGAGGCCTGGCTGCTGGCCCAGCGTACCGGCGCCACCGCG
ACGGTGAAGGACGGCGAGCGCCTGGCGCCGGCGCGCAATGCCTGGCGCGATGCGGTCCGCCAGCGCCTGCTGGCCGTGGA
TGCCCAGGGCCGCGAGGCGGGCTTGGCTGCATTGGTACTGGGCGACGGTTCCGGGCTGACGCCTGAGGACTGGCAGGTGT
TGCAGGACACGGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCACATTGGCTTGCTGGCGGGGTTGATCTACGGTTTG
ATCGCTTTGTTGGCGCGTCATGGGTGCTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCTTGGCATTTGCCGG
GGCGTTGGCTTATGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCTTGCGTCATGGTGGGCCTGGTGTTGCTGT
GGCGTTTGCGCTTTCGTCACTTGGGTGTGTGGTGGCCGTTGTTACTGGCGCTGAACGCCGTGCTGATGCTTGAGCCCCTG
GCCAGCCTGCAGCCGGGGTTCTGGCTGTCGTTTGCGGCGGTCGCGGCGCTGGTCCTGGCATTCAGCGGGCGCCTGGGGCC
GTGGAGTCCTTGGCAGGTCTGGACGCGCCCCCAGTGGTTGATCGCCATTGGCTTGTTCCCGCTGTTGCTGGTGTTGGGTT
TGCCCATCAGCCTCAGTGCACCCGTGGCCAACCTGGTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTTCCCTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGCCGGCGACGGTTTGCTGTGGTTGGCGGGTGGCGCGCTGGACGGTTTGTT
CAAGGGCCTGGCACTGCTTGCCGTGCGGCTGCCCGCCTGGATACCGGCCGAAGTACCTTTGGGCTATTGGCTGGTGAGCC
TGGCGGGCGCGGTAATTTTGCTGCTGCCCAAGGGCCTCCCGTTTCGGTTATTGGGCTGGCCCATGCTGTTGTTGGCGGTG
TTTCCACCCAGGGAGTCGATACCCCATGGGCAGGTGGACGTGGTGCAGCTGGATGTCGGCCAGGGACAGGCCCTGATCCT
GCGCACCCGCCATCACTCCTTGCTCTATGACGCAGGGCCCCGGTCGGGGCCTGTCGACCAGGGGGCGCGGGTCGTATTGC
CGTCGTTGAAAAAGCTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCTGATGCCGATCATGCCGGCGGTGCG
GCGGCAGTGGCCCGGGGGCTGCCCGTCAAGCGCGTGGTGGGCGGTGAAACCGAAGGGCTGCCAGGGTTTCTCGGTACCCA
GCCTTGTAACAGTGGCGAGCGATGGGAATGGGATGGCGTGGCTTTTGAACTGTGGCAATGGGCCGGTGCAAGTGATGGCA
ATCCGAGATCCTGCGTACTGCAGGTCGAGGCGAATGGCGAACGCCTGCTGCTCACCGGCGATATTGATCGCGCCGCCGAA
CGGGCATTCCTGGCCTCGCCGCTGGCGGTGCCCACCGATTGGTTGCAGGCCCCGCACCATGGCAGCCGCAGCTCTTCGTC
CTGGCCCTTCCTGCAGCGGCTGGCGCCGGCATCGGTGCTGATCTCCCGTGGGCGCAGCAATGCATTCGGCCATCCTCATC
CACAAGTAATGGAGCGCTATCAGGCCTTGGGCAGTCGGGTATATGACAGCGCTGAACAAGGCGCTGTGCGCCTGCGCCTG
GGAACGTTCCTGCCGCCGACTGTTGCGCGCAGTCAACGCAGGTTCTGGCGAGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G7U9P0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.031

0.575
  comA Ralstonia pseudosolanacearum GMI1000

35.768

100

0.383

Multiple sequence alignment