Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K03_RS19135 Genome accession   NZ_CP027754
Coordinates   4132263..4132898 (-) Length   211 a.a.
NCBI ID   WP_046068614.1    Uniprot ID   A0A0R3ANC2
Organism   Pseudomonas synxantha strain 30B     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4127263..4137898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K03_RS19100 (C4K03_3801) - 4127630..4128301 (+) 672 WP_034120190.1 Bax inhibitor-1/YccA family protein -
  C4K03_RS19105 (C4K03_3802) murB 4128377..4129396 (-) 1020 WP_124378416.1 UDP-N-acetylmuramate dehydrogenase -
  C4K03_RS19110 (C4K03_3803) - 4129393..4129857 (-) 465 WP_124378417.1 low molecular weight protein-tyrosine-phosphatase -
  C4K03_RS19115 (C4K03_3804) kdsB 4129857..4130621 (-) 765 WP_057014425.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K03_RS19120 (C4K03_3805) - 4130618..4130803 (-) 186 WP_003174668.1 Trm112 family protein -
  C4K03_RS19125 (C4K03_3806) lpxK 4130828..4131838 (-) 1011 WP_124378418.1 tetraacyldisaccharide 4'-kinase -
  C4K03_RS19130 (C4K03_3807) - 4131838..4132266 (-) 429 WP_043046643.1 biopolymer transporter ExbD -
  C4K03_RS19135 (C4K03_3808) exbB 4132263..4132898 (-) 636 WP_046068614.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K03_RS19140 (C4K03_3809) comA 4133008..4135233 (-) 2226 WP_124378419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K03_RS19145 (C4K03_3810) - 4135369..4135884 (+) 516 WP_043046639.1 DUF2062 domain-containing protein -
  C4K03_RS19150 (C4K03_3811) - 4135889..4137247 (-) 1359 WP_124380167.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22850.05 Da        Isoelectric Point: 7.3615

>NTDB_id=280122 C4K03_RS19135 WP_046068614.1 4132263..4132898(-) (exbB) [Pseudomonas synxantha strain 30B]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMATNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=280122 C4K03_RS19135 WP_046068614.1 4132263..4132898(-) (exbB) [Pseudomonas synxantha strain 30B]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTAGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCAGAGCACCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAACTCAAGGAACTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATTATGAAAGAGTGCATTGAAGAAGCGGCTGCGCGGGTGATCCATGAGCTGGAGCGTTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCACCGCTGCTCGGCCTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCGCGGGCATGGCGACCAACGCGGCGGTACTCGCCGGCGGTATTTCCAAGGCCTTGATCACCACGGCT
GCGGGCCTGATGGTGGGGATTCCCGCGGTGTTCTTTCACCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R3ANC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment