Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C4K04_RS28700 | Genome accession | NZ_CP027753 |
| Coordinates | 6249962..6250474 (-) | Length | 170 a.a. |
| NCBI ID | WP_124322533.1 | Uniprot ID | A0A3G7TX13 |
| Organism | Pseudomonas chlororaphis strain B25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 6244962..6255474
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4K04_RS28675 (C4K04_5828) | - | 6245058..6246053 (+) | 996 | WP_124322528.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
| C4K04_RS28680 (C4K04_5829) | - | 6246125..6246880 (-) | 756 | WP_124322529.1 | alpha/beta fold hydrolase | - |
| C4K04_RS28685 (C4K04_5830) | - | 6246870..6247979 (-) | 1110 | WP_124322530.1 | DUF3182 family protein | - |
| C4K04_RS28690 (C4K04_5831) | - | 6248160..6249167 (-) | 1008 | WP_124322531.1 | GlxA family transcriptional regulator | - |
| C4K04_RS28695 (C4K04_5832) | - | 6249271..6249825 (+) | 555 | WP_124322532.1 | cysteine hydrolase family protein | - |
| C4K04_RS28700 (C4K04_5833) | ssb | 6249962..6250474 (-) | 513 | WP_124322533.1 | single-stranded DNA-binding protein | Machinery gene |
| C4K04_RS28705 (C4K04_5834) | - | 6250484..6251878 (-) | 1395 | WP_124322534.1 | MFS transporter | - |
| C4K04_RS28710 (C4K04_5835) | uvrA | 6252060..6254894 (+) | 2835 | WP_124322535.1 | excinuclease ABC subunit UvrA | - |
| C4K04_RS28715 (C4K04_5836) | bfr | 6254988..6255452 (-) | 465 | WP_007924173.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18918.07 Da Isoelectric Point: 5.9455
>NTDB_id=280106 C4K04_RS28700 WP_124322533.1 6249962..6250474(-) (ssb) [Pseudomonas chlororaphis strain B25]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNAAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNAAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=280106 C4K04_RS28700 WP_124322533.1 6249962..6250474(-) (ssb) [Pseudomonas chlororaphis strain B25]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCTGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACGCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCTGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACGCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.427 |
100 |
0.612 |
| ssb | Glaesserella parasuis strain SC1401 |
46.392 |
100 |
0.529 |
| ssb | Neisseria meningitidis MC58 |
48.864 |
100 |
0.506 |
| ssb | Neisseria gonorrhoeae MS11 |
48.295 |
100 |
0.5 |