Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D9C20_RS06545 Genome accession   NZ_CP032867
Coordinates   1215758..1217743 (-) Length   661 a.a.
NCBI ID   WP_003228054.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1210758..1222743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS06530 (D9C20_06530) - 1211293..1211523 (+) 231 WP_003235419.1 hypothetical protein -
  D9C20_RS06535 (D9C20_06535) hag 1211717..1212538 (-) 822 WP_029318328.1 flagellin Hag -
  D9C20_RS06540 (D9C20_06540) uvrA 1212877..1215750 (-) 2874 WP_014481031.1 excinuclease ABC subunit UvrA Machinery gene
  D9C20_RS06545 (D9C20_06545) uvrB 1215758..1217743 (-) 1986 WP_003228054.1 excinuclease ABC subunit UvrB Machinery gene
  D9C20_RS06550 (D9C20_06550) csbA 1217929..1218159 (-) 231 WP_003228053.1 CsbA family protein -
  D9C20_RS06555 (D9C20_06555) fpsC 1218605..1221100 (+) 2496 WP_014481032.1 PEP/pyruvate-binding domain-containing protein -
  D9C20_RS06560 (D9C20_06560) yvkB 1221176..1221745 (+) 570 WP_003244088.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76341.15 Da        Isoelectric Point: 5.2528

>NTDB_id=280056 D9C20_RS06545 WP_003228054.1 1215758..1217743(-) (uvrB) [Bacillus subtilis subsp. subtilis strain N4-2]
MKDRFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSM
EIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAK
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=280056 D9C20_RS06545 WP_003228054.1 1215758..1217743(-) (uvrB) [Bacillus subtilis subsp. subtilis strain N4-2]
GTGAAAGATCGCTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGAAAGCCATTGAAAAGCTTGTAAAAGG
AATTCAGGAGGGCAAGAAGCATCAGACTCTGCTGGGTGCGACAGGAACTGGGAAAACATTTACGGTGTCTAATTTGATTA
AAGAAGTCAATAAGCCGACTCTCGTGATTGCCCATAACAAAACCCTTGCTGGACAGCTTTACAGTGAGTTCAAGGAATTT
TTTCCGAACAATGCTGTCGAGTATTTTGTCAGCTACTATGATTATTATCAGCCGGAGGCGTATGTGCCTCAAACGGATAC
ATTTATAGAGAAAGACGCTAGTATTAATGATGAAATTGATAAACTGAGACACTCCGCCACATCAGCTTTGTTTGAGCGCA
GAGATGTCATTATTATTGCGAGTGTGTCTTGTATATACGGCCTCGGTTCGCCTGAGGAATACCGGGAAATGGTCGTGTCA
CTGCGGACTGAAATGGAAATTGAGCGCAATGAGCTGCTCAGAAAACTTGTAGACATCCAATATGCCCGCAACGATATCGA
CTTTCAGCGCGGTACATTTCGTGTGCGCGGGGATGTAGTGGAAATCTTTCCGGCATCCCGTGATGAGCATTGTATCAGAG
TTGAATTTTTCGGTGACGAAATCGAACGGATTCGGGAAGTGGATGCGCTGACAGGAGAAATTCTCGGCGACCGAGATCAT
GTTGCGATTTTCCCGGCATCCCACTTCGTAACGCGGGCCGAGAAAATGGAGAAGGCGATTCAAAATATCGAGAAGGAGCT
TGAGGAGCAGCTGAAGGTCATGCACGAAAACGGAAAGCTCCTTGAAGCGCAGCGTTTAGAGCAGCGGACAAGATATGATC
TTGAAATGATGCGTGAAATGGGTTTCTGCTCCGGCATCGAGAACTATTCAAGACATTTGACTCTGCGGCCTCCAGGTTCA
ACGCCGTATACGCTTCTTGATTATTTCCCAGACGATTTTATGATCGTGGTGGATGAGTCGCATGTGACAATTCCCCAGGT
GCGCGGCATGTTTAACGGAGACCAGGCGCGGAAACAGGTGCTCGTGGATCACGGCTTCCGGCTTCCATCAGCGCTTGATA
ACCGTCCGCTTCGTTTTGAGGAATTTGAAAAGCATATGCACAATATCGTGTATGTATCCGCAACACCAGGGCCGTACGAG
ATTGAACATACAGATGAAATGGTCGAACAGATCATTCGTCCGACGGGGCTTCTTGACCCGCTTATTGACGTCCGTCCAAT
CGAAGGTCAGATTGACGACTTGATCGGCGAAATTCAAGCAAGAATCGAGCGAAATGAACGGGTGCTTGTGACAACTTTGA
CGAAGAAGATGTCAGAGGATCTGACCGATTATTTAAAGGAAATCGGCATTAAAGTAAACTATCTGCATTCTGAAATCAAG
ACGCTTGAACGGATTGAAATTATCCGCGACCTGCGCCTTGGCAAGTACGATGTGCTTGTCGGCATCAACCTGCTGAGGGA
AGGTTTGGACATTCCCGAAGTATCCCTTGTTGCGATTTTGGATGCGGATAAGGAAGGTTTCCTTCGTTCGGAGCGGTCGC
TGATCCAGACCATCGGACGGGCAGCGAGAAATGCGGAAGGCCGCGTCATTATGTACGCCGATAAAATAACGAAGTCTATG
GAAATTGCGATTAATGAAACAAAACGCCGCCGCGAGCAGCAGGAGCGGTTTAATGAAGAGCACGGCATTACGCCGAAAAC
GATAAATAAAGAAATTCGCGATGTCATTCGTGCCACAGTAGCAGCTGAGGATAAAGCGGAATACAAAACAAAAGCCGCGC
CGAAGCTGTCGAAAATGACGAAGAAAGAACGCCAGAAAGTCGTTGAACAGATGGAGCATGAAATGAAGGAAGCCGCCAAG
GCGCTTGACTTTGAGAGAGCCGCGGAGCTTCGCGATTTACTTTTAGAGCTAAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(12-138)

UvrB interaction domain (UvrB_inter)

(159-249)

UvrB/uvrC motif (UVR)

(626-659)

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

Ultra-violet resistance protein B (UvrB)

(551-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.561

99.697

0.703
  uvrB Streptococcus pneumoniae R6

70.41

99.697

0.702
  uvrB Streptococcus pneumoniae D39

70.41

99.697

0.702