Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   D9C20_RS06540 Genome accession   NZ_CP032867
Coordinates   1212877..1215750 (-) Length   957 a.a.
NCBI ID   WP_014481031.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1207877..1220750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS06510 (D9C20_06510) yvlD 1209064..1209423 (-) 360 WP_003228066.1 phage holin family protein -
  D9C20_RS06515 (D9C20_06515) yvlC 1209425..1209622 (-) 198 WP_003228065.1 PspC domain-containing protein -
  D9C20_RS06520 (D9C20_06520) yvlB 1209627..1210724 (-) 1098 WP_014481027.1 DUF4097 domain-containing protein -
  D9C20_RS06525 (D9C20_06525) yvlA 1210749..1211075 (-) 327 WP_003244375.1 protein YvlA -
  D9C20_RS06530 (D9C20_06530) - 1211293..1211523 (+) 231 WP_003235419.1 hypothetical protein -
  D9C20_RS06535 (D9C20_06535) hag 1211717..1212538 (-) 822 WP_029318328.1 flagellin Hag -
  D9C20_RS06540 (D9C20_06540) uvrA 1212877..1215750 (-) 2874 WP_014481031.1 excinuclease ABC subunit UvrA Machinery gene
  D9C20_RS06545 (D9C20_06545) uvrB 1215758..1217743 (-) 1986 WP_003228054.1 excinuclease ABC subunit UvrB Machinery gene
  D9C20_RS06550 (D9C20_06550) csbA 1217929..1218159 (-) 231 WP_003228053.1 CsbA family protein -

Sequence

Protein


Download         Length: 957 a.a.        Molecular weight: 106014.15 Da        Isoelectric Point: 6.1367

>NTDB_id=280055 D9C20_RS06540 WP_014481031.1 1212877..1215750(-) (uvrA) [Bacillus subtilis subsp. subtilis strain N4-2]
MAMDRIEVKGARAHNLKNIDVTIPRDQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDAIEG
LSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARVGKPHCPEHGIEITSQTIEQMVDRILEYPERTKLQVLAPIVSGR
KGAHVKVLEQIRKQGYVRVRIDGEMAELSDDIELEKNKKHSIEVVIDRIVVKEGVAARLSDSLETALRLSEGRVMIDVIG
EEELMFSEHHACPHCGFSIGELEPRLFSFNSPFGACPTCDGLGMKLEVDADLVIPNQDLSLKENAVAPWTPISSQYYPQL
LEAACTHYGIDMDVPVKDLPKHQLDKVLYGSGDDLIYFRYENDFGQIREGEIQFEGVLRNIERRYKETGSDFIREQMEQY
MSQKSCPTCKGYRLKKEALAVLIDGRHIGKITELSVADALAFFKNLTLSEKDMQIANLILREIVERLSFLDKVGLDYLTL
SRAAGTLSGGEAQRIRLATQIGSRLSGVLYILDEPSIGLHQRDNDRLISALKNMRDLGNTLIVVEHDEDTMMAADYLIDI
GPGAGIHGGQVISAGTPEEVMEDPNSLTGSYLSGEKFIPLPPERRKPDGRYIEIKGASENNLKKVNAKFPLGTFTAVTGV
SGSGKSTLVNEILHKALAQKLHKAKAKPGSHKEIKGLDHLDKVIDIDQAPIGRTPRSNPATYTGVFDDIRDVFAQTNEAK
VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKSISDVLDMTVEDALPFFEN
IPKIKRKLQTLYDVGLGYITLGQPATTLSGGEAQRVKLASELHKRSTGRTLYILDEPTTGLHVDDIARLLVVLQRLVDNG
DTVLVIEHNLDIIKTADYIVDLGPEGGAGGGTIVASGTPEEITEVEESYTGRYLKPVIERDKARMKSLLKAKETATS

Nucleotide


Download         Length: 2874 bp        

>NTDB_id=280055 D9C20_RS06540 WP_014481031.1 1212877..1215750(-) (uvrA) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGGCTATGGATCGGATAGAGGTGAAGGGAGCCAGGGCGCATAACCTGAAAAATATAGATGTGACGATTCCGAGAGATCA
GCTTGTCGTTGTCACGGGTTTGTCCGGATCAGGTAAATCCTCCCTTGCCTTTGACACGATATATGCTGAAGGACAGAGAC
GGTATGTCGAGTCGCTGTCTGCCTATGCCCGCCAGTTTTTAGGGCAAATGGATAAGCCGGATGTGGATGCAATTGAGGGG
CTCTCTCCCGCCATCAGCATTGATCAGAAAACAACGAGCCGCAATCCGAGGTCTACTGTCGGTACGGTAACTGAGATTTA
TGATTATCTGCGTCTTTTATATGCGAGAGTAGGGAAGCCTCATTGTCCGGAACACGGAATTGAGATTACATCCCAGACCA
TCGAGCAAATGGTGGACAGAATTCTGGAATACCCGGAACGGACGAAGCTTCAGGTGCTGGCGCCGATTGTATCGGGCCGA
AAAGGCGCTCATGTCAAAGTGCTTGAACAGATTAGGAAACAAGGCTATGTCAGAGTCAGAATTGACGGCGAGATGGCTGA
GCTTTCCGACGATATCGAATTAGAAAAGAACAAGAAGCATTCCATTGAGGTAGTCATTGACCGGATTGTCGTGAAAGAAG
GCGTGGCAGCCCGGCTGTCAGATTCATTGGAAACGGCGCTTCGTTTAAGTGAAGGACGGGTTATGATCGATGTCATCGGT
GAGGAAGAGCTGATGTTCAGCGAGCATCATGCCTGTCCGCACTGCGGATTTTCAATTGGTGAACTTGAGCCGCGTCTGTT
TTCGTTTAACAGTCCGTTCGGGGCGTGTCCGACGTGTGACGGTCTCGGAATGAAGCTTGAAGTGGATGCCGATCTTGTCA
TCCCCAATCAAGATTTGTCATTGAAGGAGAATGCGGTCGCCCCTTGGACACCGATCAGCTCACAATATTATCCTCAGCTG
CTTGAGGCAGCCTGCACCCACTACGGGATTGATATGGATGTGCCGGTCAAAGATTTGCCGAAGCATCAACTGGATAAAGT
GCTGTACGGCAGCGGAGATGACCTGATTTATTTCAGATATGAAAATGATTTTGGACAAATCCGTGAAGGTGAAATTCAAT
TTGAAGGCGTATTGCGCAACATTGAAAGACGCTATAAGGAGACAGGCTCTGATTTCATCCGTGAGCAGATGGAGCAGTAT
ATGTCTCAGAAGTCTTGTCCGACGTGCAAAGGCTATCGGTTAAAGAAAGAGGCGCTTGCCGTACTGATTGACGGCCGCCA
CATCGGAAAAATTACCGAGCTGTCTGTCGCCGACGCACTTGCCTTCTTTAAAAACCTTACCCTTTCTGAGAAGGATATGC
AGATCGCCAATTTGATTTTGCGCGAAATTGTGGAGCGCTTAAGCTTTCTGGACAAAGTCGGCCTCGATTACCTGACATTG
AGCAGGGCAGCGGGTACATTGTCCGGGGGAGAGGCGCAGCGCATCAGGCTGGCGACTCAAATTGGCTCGCGCTTATCCGG
TGTGCTTTATATTTTAGATGAGCCGTCTATCGGTCTGCATCAGCGTGATAACGACCGCTTGATCAGCGCTCTGAAAAATA
TGAGAGACCTCGGGAACACGCTGATTGTTGTCGAACATGATGAGGACACGATGATGGCAGCAGATTATTTAATAGATATT
GGACCGGGAGCCGGTATTCACGGCGGACAGGTGATATCTGCGGGTACGCCGGAAGAAGTGATGGAAGATCCAAACTCATT
AACGGGCAGCTATTTATCAGGGGAAAAGTTTATCCCATTGCCTCCTGAAAGAAGAAAGCCGGACGGACGTTACATTGAAA
TTAAAGGTGCTTCAGAAAACAACTTGAAAAAAGTGAATGCCAAGTTCCCGCTTGGGACGTTTACAGCAGTTACAGGTGTT
TCCGGTTCAGGGAAGAGTACACTCGTTAATGAAATTTTGCATAAGGCGCTGGCGCAAAAGCTTCATAAAGCGAAAGCGAA
GCCCGGCAGCCATAAAGAGATTAAAGGTTTGGATCATTTAGACAAAGTCATTGACATTGACCAGGCGCCAATTGGAAGAA
CGCCGAGATCCAACCCTGCGACATACACCGGTGTATTTGATGACATTCGTGATGTATTCGCGCAGACAAATGAAGCGAAG
GTCCGCGGCTATAAAAAAGGCCGTTTCAGCTTCAACGTGAAGGGCGGACGATGTGAAGCCTGCCGCGGAGACGGGATTAT
TAAAATTGAAATGCACTTCCTTCCTGACGTATACGTTCCATGCGAGGTGTGTCACGGCAAACGCTATAACCGTGAAACGC
TTGAAGTGACGTACAAAGGAAAAAGCATCTCTGATGTGCTTGATATGACGGTTGAAGATGCTCTTCCTTTCTTTGAAAAT
ATCCCGAAAATCAAACGCAAGCTCCAAACCCTTTATGATGTTGGTTTAGGTTATATTACGCTCGGCCAGCCGGCGACGAC
CTTGTCAGGCGGAGAAGCGCAGCGCGTGAAGCTCGCGTCAGAGCTGCACAAACGCTCGACCGGACGCACGCTCTACATTT
TAGATGAGCCGACGACAGGTTTGCATGTCGACGATATCGCCAGGCTTCTTGTCGTGCTGCAACGGTTGGTAGACAACGGA
GACACTGTACTGGTTATTGAGCACAACCTTGATATCATTAAGACGGCCGATTACATTGTGGATTTGGGCCCGGAAGGCGG
AGCCGGGGGCGGAACCATTGTCGCGTCTGGAACGCCTGAGGAAATCACTGAAGTTGAAGAATCGTATACAGGCCGTTATT
TGAAGCCTGTTATCGAACGTGACAAAGCACGCATGAAATCGCTCTTGAAAGCGAAAGAAACAGCTACATCTTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(289-399)

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(622-858)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

69.198

97.701

0.676
  uvrA Streptococcus pneumoniae TIGR4

69.198

97.701

0.676
  uvrA Streptococcus pneumoniae D39

69.198

97.701

0.676

Multiple sequence alignment