Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4K08_RS28680 Genome accession   NZ_CP027749
Coordinates   6340249..6340761 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6335249..6345761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K08_RS28655 (C4K08_5772) - 6335342..6336337 (+) 996 WP_124302200.1 lysylphosphatidylglycerol synthase domain-containing protein -
  C4K08_RS28660 (C4K08_5773) - 6336410..6337165 (-) 756 WP_038575407.1 alpha/beta fold hydrolase -
  C4K08_RS28665 (C4K08_5774) - 6337155..6338264 (-) 1110 WP_124345206.1 DUF3182 family protein -
  C4K08_RS28670 (C4K08_5775) - 6338446..6339453 (-) 1008 WP_016702648.1 GlxA family transcriptional regulator -
  C4K08_RS28675 (C4K08_5776) - 6339557..6340111 (+) 555 WP_101283715.1 cysteine hydrolase family protein -
  C4K08_RS28680 (C4K08_5777) ssb 6340249..6340761 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  C4K08_RS28685 (C4K08_5778) - 6340771..6342165 (-) 1395 WP_009051114.1 MFS transporter -
  C4K08_RS28690 (C4K08_5779) uvrA 6342346..6345180 (+) 2835 WP_016702646.1 excinuclease ABC subunit UvrA -
  C4K08_RS28695 (C4K08_5780) bfr 6345274..6345738 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=280003 C4K08_RS28680 WP_009045846.1 6340249..6340761(-) (ssb) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=280003 C4K08_RS28680 WP_009045846.1 6340249..6340761(-) (ssb) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment