Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4K17_RS28910 Genome accession   NZ_CP027746
Coordinates   6390594..6391106 (-) Length   170 a.a.
NCBI ID   WP_081359608.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6385594..6396106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K17_RS28900 (C4K17_5872) - 6386737..6389133 (+) 2397 WP_081359610.1 hypothetical protein -
  C4K17_RS28905 (C4K17_5873) - 6389446..6390501 (+) 1056 WP_081359609.1 hypothetical protein -
  C4K17_RS28910 (C4K17_5874) ssb 6390594..6391106 (-) 513 WP_081359608.1 single-stranded DNA-binding protein Machinery gene
  C4K17_RS28915 (C4K17_5875) - 6391116..6392510 (-) 1395 WP_081359607.1 MFS transporter -
  C4K17_RS28920 (C4K17_5876) uvrA 6392691..6395525 (+) 2835 WP_081359606.1 excinuclease ABC subunit UvrA -
  C4K17_RS28925 (C4K17_5877) bfr 6395619..6396083 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18907.04 Da        Isoelectric Point: 5.9455

>NTDB_id=279952 C4K17_RS28910 WP_081359608.1 6390594..6391106(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGSSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=279952 C4K17_RS28910 WP_081359608.1 6390594..6391106(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAGCTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAGCGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.632

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment