Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4K29_RS28820 Genome accession   NZ_CP027740
Coordinates   6356828..6357340 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. piscium strain ChPhzS140     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6351828..6362340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K29_RS28800 (C4K29_5834) clsB 6352573..6353874 (+) 1302 WP_124303707.1 cardiolipin synthase ClsB -
  C4K29_RS28805 (C4K29_5835) - 6353861..6354853 (+) 993 WP_025807820.1 lysylphosphatidylglycerol synthase domain-containing protein -
  C4K29_RS28810 (C4K29_5836) - 6355036..6356043 (-) 1008 WP_124303709.1 GlxA family transcriptional regulator -
  C4K29_RS28815 (C4K29_5837) - 6356147..6356701 (+) 555 WP_124303711.1 cysteine hydrolase family protein -
  C4K29_RS28820 (C4K29_5838) ssb 6356828..6357340 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  C4K29_RS28825 (C4K29_5839) - 6357350..6358744 (-) 1395 WP_063433182.1 MFS transporter -
  C4K29_RS28830 (C4K29_5840) uvrA 6358925..6361759 (+) 2835 WP_025807824.1 excinuclease ABC subunit UvrA -
  C4K29_RS28835 (C4K29_5841) bfr 6361853..6362317 (-) 465 WP_124303713.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=279819 C4K29_RS28820 WP_009045846.1 6356828..6357340(-) (ssb) [Pseudomonas chlororaphis subsp. piscium strain ChPhzS140]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=279819 C4K29_RS28820 WP_009045846.1 6356828..6357340(-) (ssb) [Pseudomonas chlororaphis subsp. piscium strain ChPhzS140]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTATACCACTGAAATCATCGTCGACATGCAAGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCACAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCACCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment