Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4K34_RS28190 Genome accession   NZ_CP027735
Coordinates   6314253..6314765 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. piscium strain DTR133     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6309253..6319765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K34_RS28170 (C4K34_5694) clsB 6309998..6311299 (+) 1302 WP_124303707.1 cardiolipin synthase ClsB -
  C4K34_RS28175 (C4K34_5695) - 6311286..6312278 (+) 993 WP_025807820.1 lysylphosphatidylglycerol synthase domain-containing protein -
  C4K34_RS28180 (C4K34_5696) - 6312461..6313468 (-) 1008 WP_124303709.1 GlxA family transcriptional regulator -
  C4K34_RS28185 (C4K34_5697) - 6313572..6314126 (+) 555 WP_124303711.1 cysteine hydrolase family protein -
  C4K34_RS28190 (C4K34_5698) ssb 6314253..6314765 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  C4K34_RS28195 (C4K34_5699) - 6314775..6316169 (-) 1395 WP_063433182.1 MFS transporter -
  C4K34_RS28200 (C4K34_5700) uvrA 6316350..6319184 (+) 2835 WP_025807824.1 excinuclease ABC subunit UvrA -
  C4K34_RS28205 (C4K34_5701) bfr 6319278..6319742 (-) 465 WP_124303713.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=279684 C4K34_RS28190 WP_009045846.1 6314253..6314765(-) (ssb) [Pseudomonas chlororaphis subsp. piscium strain DTR133]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=279684 C4K34_RS28190 WP_009045846.1 6314253..6314765(-) (ssb) [Pseudomonas chlororaphis subsp. piscium strain DTR133]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTATACCACTGAAATCATCGTCGACATGCAAGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCACAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCACCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment