Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4J87_RS22860 Genome accession   NZ_CP027734
Coordinates   4978856..4979371 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas sp. R1-43-08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4973856..4984371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J87_RS22835 (C4J87_4535) - 4974235..4975188 (+) 954 WP_124368525.1 lysylphosphatidylglycerol synthase domain-containing protein -
  C4J87_RS22840 (C4J87_4536) - 4975316..4976071 (-) 756 WP_124364607.1 S9 family peptidase -
  C4J87_RS22845 (C4J87_4537) - 4976061..4977170 (-) 1110 WP_124368526.1 DUF3182 family protein -
  C4J87_RS22850 (C4J87_4538) - 4977420..4977983 (+) 564 WP_124368527.1 cysteine hydrolase family protein -
  C4J87_RS22855 (C4J87_4539) tam 4978000..4978761 (-) 762 WP_124368528.1 trans-aconitate 2-methyltransferase -
  C4J87_RS22860 (C4J87_4540) ssb 4978856..4979371 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  C4J87_RS22865 (C4J87_4541) - 4979381..4980775 (-) 1395 WP_124364611.1 MFS transporter -
  C4J87_RS22870 (C4J87_5205) uvrA 4980954..4983787 (+) 2834 Protein_4469 excinuclease ABC subunit UvrA -
  C4J87_RS22875 (C4J87_4542) bfr 4983853..4984317 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=279657 C4J87_RS22860 WP_003232445.1 4978856..4979371(-) (ssb) [Pseudomonas sp. R1-43-08]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=279657 C4J87_RS22860 WP_003232445.1 4978856..4979371(-) (ssb) [Pseudomonas sp. R1-43-08]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACCTGCCGAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACTGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTATACATCGAA
GGTAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCTCAGC
AATCGCGTCCGCAGCCAAGCCAGCAGCCGCAGCGTGAGTCGCGCCCAGCGCCACAACAGGCCGCGCCGCAGCCAGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment