Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4J96_RS24035 Genome accession   NZ_CP027725
Coordinates   5263289..5263804 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas orientalis strain R2-66-08W     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5258289..5268804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J96_RS24010 (C4J96_4803) - 5258793..5259749 (+) 957 WP_124425155.1 lysylphosphatidylglycerol synthase domain-containing protein -
  C4J96_RS24015 (C4J96_4804) - 5259754..5260509 (-) 756 WP_057724838.1 alpha/beta hydrolase family protein -
  C4J96_RS24020 (C4J96_4805) - 5260499..5261608 (-) 1110 WP_124427692.1 DUF3182 family protein -
  C4J96_RS24025 (C4J96_4806) - 5261857..5262417 (+) 561 WP_124360016.1 cysteine hydrolase family protein -
  C4J96_RS24030 (C4J96_4807) tam 5262434..5263195 (-) 762 WP_124427693.1 trans-aconitate 2-methyltransferase -
  C4J96_RS24035 (C4J96_4808) ssb 5263289..5263804 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  C4J96_RS24040 (C4J96_4809) - 5263814..5265208 (-) 1395 WP_124360018.1 MFS transporter -
  C4J96_RS24045 (C4J96_4810) uvrA 5265387..5268221 (+) 2835 WP_124360019.1 excinuclease ABC subunit UvrA -
  C4J96_RS24050 (C4J96_4811) bfr 5268288..5268752 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=279439 C4J96_RS24035 WP_003232445.1 5263289..5263804(-) (ssb) [Pseudomonas orientalis strain R2-66-08W]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=279439 C4J96_RS24035 WP_003232445.1 5263289..5263804(-) (ssb) [Pseudomonas orientalis strain R2-66-08W]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCCGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAGTTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCGCGCCCGCAGC
AATCGCGTCCGCAGCCAAGCCAGCAGCCCCAGCGTGAGTCGCGTCCAGCGCCACAACAGGCCGCGCCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment