Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4J97_RS24065 Genome accession   NZ_CP027724
Coordinates   5289940..5290455 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas orientalis strain L1-3-08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5284940..5295455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J97_RS24040 (C4J97_4860) - 5285431..5286186 (-) 756 WP_057724838.1 alpha/beta hydrolase family protein -
  C4J97_RS24045 (C4J97_4861) - 5286176..5287285 (-) 1110 WP_124425156.1 DUF3182 family protein -
  C4J97_RS24050 (C4J97_4862) - 5287456..5288414 (-) 959 Protein_4650 GlxA family transcriptional regulator -
  C4J97_RS24055 (C4J97_4863) - 5288509..5289069 (+) 561 WP_124425157.1 cysteine hydrolase family protein -
  C4J97_RS24060 (C4J97_4864) tam 5289086..5289847 (-) 762 WP_124425158.1 trans-aconitate 2-methyltransferase -
  C4J97_RS24065 (C4J97_4865) ssb 5289940..5290455 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  C4J97_RS24070 (C4J97_4866) - 5290465..5291859 (-) 1395 WP_124360018.1 MFS transporter -
  C4J97_RS24075 (C4J97_4867) uvrA 5292038..5294872 (+) 2835 WP_124425159.1 excinuclease ABC subunit UvrA -
  C4J97_RS24080 (C4J97_4868) bfr 5294939..5295403 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=279415 C4J97_RS24065 WP_003232445.1 5289940..5290455(-) (ssb) [Pseudomonas orientalis strain L1-3-08]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=279415 C4J97_RS24065 WP_003232445.1 5289940..5290455(-) (ssb) [Pseudomonas orientalis strain L1-3-08]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCCGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGTAC
CATGCAACTGCTGGGCGGCCGTCCCCAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCGCGCCCGCAGC
AATCGCGTCCGCAGCCAAGCCAGCAGCCGCAGCGTGAGTCGCGTCCGGCGCCACAACAGGCCGCCCCGCAGCCAGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment