Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C4J98_RS23755 | Genome accession | NZ_CP027723 |
| Coordinates | 5234137..5234652 (-) | Length | 171 a.a. |
| NCBI ID | WP_003232445.1 | Uniprot ID | A0A0W0N9K8 |
| Organism | Pseudomonas orientalis strain 8B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5229137..5239652
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4J98_RS23730 (C4J98_4727) | - | 5229640..5230596 (+) | 957 | WP_124434193.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
| C4J98_RS23735 (C4J98_4728) | - | 5230600..5231355 (-) | 756 | WP_057724838.1 | alpha/beta hydrolase family protein | - |
| C4J98_RS23740 (C4J98_4729) | - | 5231345..5232454 (-) | 1110 | WP_124434194.1 | DUF3182 family protein | - |
| C4J98_RS23745 (C4J98_4730) | - | 5232704..5233264 (+) | 561 | WP_124434195.1 | cysteine hydrolase family protein | - |
| C4J98_RS23750 (C4J98_4731) | tam | 5233281..5234042 (-) | 762 | WP_124434196.1 | trans-aconitate 2-methyltransferase | - |
| C4J98_RS23755 (C4J98_4732) | ssb | 5234137..5234652 (-) | 516 | WP_003232445.1 | single-stranded DNA-binding protein | Machinery gene |
| C4J98_RS23760 (C4J98_4733) | - | 5234662..5236056 (-) | 1395 | WP_124434197.1 | MFS transporter | - |
| C4J98_RS23765 (C4J98_4734) | uvrA | 5236235..5239069 (+) | 2835 | WP_124360019.1 | excinuclease ABC subunit UvrA | - |
| C4J98_RS23770 (C4J98_4735) | bfr | 5239136..5239600 (-) | 465 | WP_065930320.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19015.19 Da Isoelectric Point: 5.9455
>NTDB_id=279391 C4J98_RS23755 WP_003232445.1 5234137..5234652(-) (ssb) [Pseudomonas orientalis strain 8B]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF
Nucleotide
Download Length: 516 bp
>NTDB_id=279391 C4J98_RS23755 WP_003232445.1 5234137..5234652(-) (ssb) [Pseudomonas orientalis strain 8B]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCCGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCGCGTCCACAGC
AATCGCGTCCGCAGCCAAGCCAGCAGCCTCAGCGTGAGTCGCGTCCAGCGCCACAACAGGCCGCCCCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCCGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCGCGTCCACAGC
AATCGCGTCCGCAGCCAAGCCAGCAGCCTCAGCGTGAGTCGCGTCCAGCGCCACAACAGGCCGCCCCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.659 |
100 |
0.614 |
| ssb | Glaesserella parasuis strain SC1401 |
45.833 |
100 |
0.515 |
| ssb | Neisseria gonorrhoeae MS11 |
47.753 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
46.023 |
100 |
0.474 |