Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4K16_RS27620 Genome accession   NZ_CP027717
Coordinates   6127867..6128379 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6122867..6133379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K16_RS27610 (C4K16_5607) - 6124010..6126406 (+) 2397 WP_081359610.1 hypothetical protein -
  C4K16_RS27615 (C4K16_5608) - 6126719..6127774 (+) 1056 WP_081359609.1 hypothetical protein -
  C4K16_RS27620 (C4K16_5609) ssb 6127867..6128379 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  C4K16_RS31545 - 6128389..6128610 (-) 222 WP_241193982.1 hypothetical protein -
  C4K16_RS27625 (C4K16_6306) - 6128650..6129782 (-) 1133 Protein_5435 MFS transporter -
  C4K16_RS27630 (C4K16_5610) uvrA 6129963..6132797 (+) 2835 WP_081359606.1 excinuclease ABC subunit UvrA -
  C4K16_RS27635 (C4K16_5611) bfr 6132891..6133355 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=279238 C4K16_RS27620 WP_009045846.1 6127867..6128379(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=279238 C4K16_RS27620 WP_009045846.1 6127867..6128379(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAATTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAGCGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment