Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4K26_RS27110 Genome accession   NZ_CP027713
Coordinates   5959149..5959661 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain TAMOak81     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5954149..5964661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K26_RS27085 (C4K26_5463) - 5954610..5955605 (+) 996 WP_124352804.1 lysylphosphatidylglycerol synthase domain-containing protein -
  C4K26_RS27090 (C4K26_5464) - 5955700..5956455 (-) 756 WP_124352805.1 alpha/beta fold hydrolase -
  C4K26_RS27095 (C4K26_5465) - 5956445..5957554 (-) 1110 WP_124352806.1 DUF3182 family protein -
  C4K26_RS27100 (C4K26_6189) - 5957737..5958355 (-) 619 Protein_5325 helix-turn-helix domain-containing protein -
  C4K26_RS27105 (C4K26_5467) - 5958459..5959013 (+) 555 WP_124352807.1 cysteine hydrolase family protein -
  C4K26_RS27110 (C4K26_5468) ssb 5959149..5959661 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  C4K26_RS27115 (C4K26_5469) - 5959671..5961065 (-) 1395 WP_124352808.1 MFS transporter -
  C4K26_RS27120 (C4K26_5470) uvrA 5961246..5964080 (+) 2835 WP_124352809.1 excinuclease ABC subunit UvrA -
  C4K26_RS27125 (C4K26_5471) bfr 5964172..5964636 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=279133 C4K26_RS27110 WP_009045846.1 5959149..5959661(-) (ssb) [Pseudomonas chlororaphis strain TAMOak81]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=279133 C4K26_RS27110 WP_009045846.1 5959149..5959661(-) (ssb) [Pseudomonas chlororaphis strain TAMOak81]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment