Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4K38_RS28645 Genome accession   NZ_CP027707
Coordinates   6303009..6303521 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. piscium strain DSM 21509     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6298009..6308521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K38_RS28620 (C4K38_5791) clsB 6298679..6299980 (+) 1302 WP_053281124.1 cardiolipin synthase ClsB -
  C4K38_RS28625 (C4K38_5792) - 6299967..6300962 (+) 996 WP_053281125.1 lysylphosphatidylglycerol synthase domain-containing protein -
  C4K38_RS28630 - 6301037..6301128 (-) 92 Protein_5614 alpha/beta hydrolase -
  C4K38_RS28635 (C4K38_5793) - 6301218..6302225 (-) 1008 WP_053281126.1 GlxA family transcriptional regulator -
  C4K38_RS28640 (C4K38_5794) - 6302329..6302883 (+) 555 WP_053281127.1 cysteine hydrolase family protein -
  C4K38_RS28645 (C4K38_5795) ssb 6303009..6303521 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  C4K38_RS28650 (C4K38_5796) - 6303531..6304925 (-) 1395 WP_053281128.1 MFS transporter -
  C4K38_RS28655 (C4K38_5797) uvrA 6305106..6307940 (+) 2835 WP_025807824.1 excinuclease ABC subunit UvrA -
  C4K38_RS28660 (C4K38_5798) bfr 6308034..6308498 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=278976 C4K38_RS28645 WP_009045846.1 6303009..6303521(-) (ssb) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=278976 C4K38_RS28645 WP_009045846.1 6303009..6303521(-) (ssb) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment