Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4K40_RS28075 Genome accession   NZ_CP027705
Coordinates   6084900..6085406 (-) Length   168 a.a.
NCBI ID   WP_022641321.1    Uniprot ID   A0A7X1KFV7
Organism   Pseudomonas sp. CMR5c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6079900..6090406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K40_RS28065 (C4K40_5692) - 6081162..6083021 (+) 1860 WP_053134931.1 hypothetical protein -
  C4K40_RS28070 (C4K40_5693) - 6083053..6084105 (+) 1053 WP_053134934.1 hypothetical protein -
  C4K40_RS31675 - 6084220..6084360 (-) 141 WP_157064365.1 hypothetical protein -
  C4K40_RS28075 (C4K40_5695) ssb 6084900..6085406 (-) 507 WP_022641321.1 single-stranded DNA-binding protein Machinery gene
  C4K40_RS28080 (C4K40_5696) - 6085416..6086810 (-) 1395 WP_053134937.1 MFS transporter -
  C4K40_RS28085 (C4K40_5697) uvrA 6086988..6089822 (+) 2835 WP_022641323.1 excinuclease ABC subunit UvrA -
  C4K40_RS28090 (C4K40_5698) bfr 6089907..6090371 (-) 465 WP_022641324.1 bacterioferritin -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18768.91 Da        Isoelectric Point: 5.9314

>NTDB_id=278926 C4K40_RS28075 WP_022641321.1 6084900..6085406(-) (ssb) [Pseudomonas sp. CMR5c]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPRQQAPRPQQAPQRPAPQQPAPQPAPDFD
SFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=278926 C4K40_RS28075 WP_022641321.1 6084900..6085406(-) (ssb) [Pseudomonas sp. CMR5c]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCGGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAACAGGGCGACCAACAGGGCGGCGGCAACAACTACCAGCAGTCCGCACCTCGCC
AGCAGGCACCACGTCCGCAACAGGCTCCGCAGCGTCCAGCGCCACAACAGCCTGCTCCGCAGCCGGCACCGGACTTCGAC
AGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X1KFV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.143

100

0.619
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.53
  ssb Neisseria gonorrhoeae MS11

49.438

100

0.524
  ssb Neisseria meningitidis MC58

48.876

100

0.518

Multiple sequence alignment