Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C6Y50_RS10350 | Genome accession | NZ_CP027664 |
| Coordinates | 2198867..2199358 (+) | Length | 163 a.a. |
| NCBI ID | WP_003281797.1 | Uniprot ID | A0A210XTT8 |
| Organism | Stutzerimonas stutzeri strain 1W1-1A | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2193867..2204358
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6Y50_RS10340 (C6Y50_10345) | uvrA | 2194359..2197196 (-) | 2838 | WP_013981718.1 | excinuclease ABC subunit UvrA | - |
| C6Y50_RS10345 (C6Y50_10350) | - | 2197328..2198695 (+) | 1368 | WP_106442780.1 | MFS transporter | - |
| C6Y50_RS10350 (C6Y50_10355) | ssb | 2198867..2199358 (+) | 492 | WP_003281797.1 | single-stranded DNA-binding protein | Machinery gene |
| C6Y50_RS10355 (C6Y50_10360) | - | 2199369..2200253 (+) | 885 | WP_017244908.1 | sugar nucleotide-binding protein | - |
| C6Y50_RS10360 (C6Y50_10365) | - | 2200246..2201175 (+) | 930 | WP_014595783.1 | NAD-dependent epimerase/dehydratase family protein | - |
| C6Y50_RS10365 (C6Y50_10370) | - | 2201246..2201932 (-) | 687 | WP_014595784.1 | OmpW/AlkL family protein | - |
| C6Y50_RS10370 (C6Y50_10375) | - | 2202118..2202903 (+) | 786 | WP_014595785.1 | DUF3450 domain-containing protein | - |
| C6Y50_RS10375 (C6Y50_10380) | - | 2202900..2204246 (+) | 1347 | WP_014595786.1 | MotA/TolQ/ExbB proton channel family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18314.38 Da Isoelectric Point: 5.9492
>NTDB_id=278777 C6Y50_RS10350 WP_003281797.1 2198867..2199358(+) (ssb) [Stutzerimonas stutzeri strain 1W1-1A]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF
Nucleotide
Download Length: 492 bp
>NTDB_id=278777 C6Y50_RS10350 WP_003281797.1 2198867..2199358(+) (ssb) [Stutzerimonas stutzeri strain 1W1-1A]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCAGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCAGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.571 |
100 |
0.607 |
| ssb | Neisseria gonorrhoeae MS11 |
47.727 |
100 |
0.515 |
| ssb | Glaesserella parasuis strain SC1401 |
45.355 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.503 |