Detailed information NTG0278767

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: C6Y50_RS05345
• Genome accession: NZ_CP027664
• Coordinates: 1148499..1149644 (-)
• Length: 381 a.a.
• NCBI ID: WP_019405534.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain 1W1-1A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1143499..1154644

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6Y50_RS05320 (C6Y50_05320)	-	1143576..1144592 (+)	1017	WP_011914964.1	aspartate carbamoyltransferase catalytic subunit	-
C6Y50_RS05325 (C6Y50_05325)	-	1144592..1145866 (+)	1275	WP_011914965.1	dihydroorotase	-
C6Y50_RS05330 (C6Y50_05330)	-	1145924..1146319 (-)	396	WP_106442485.1	NINE protein	-
C6Y50_RS05335 (C6Y50_05335)	-	1146455..1147669 (+)	1215	WP_049340316.1	putative DNA modification/repair radical SAM protein	-
C6Y50_RS05340 (C6Y50_05340)	-	1147669..1148502 (+)	834	WP_106442486.1	TIGR03915 family putative DNA repair protein	-
C6Y50_RS05345 (C6Y50_05345)	pilU	1148499..1149644 (-)	1146	WP_019405534.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
C6Y50_RS05350 (C6Y50_05350)	pilT	1149704..1150738 (-)	1035	WP_011914970.1	type IV pilus twitching motility protein PilT	Machinery gene
C6Y50_RS05355 (C6Y50_05355)	-	1150805..1151494 (+)	690	WP_020305660.1	YggS family pyridoxal phosphate-dependent enzyme	-
C6Y50_RS05360 (C6Y50_05360)	proC	1151505..1152329 (+)	825	WP_045159852.1	pyrroline-5-carboxylate reductase	-
C6Y50_RS05365 (C6Y50_05365)	-	1152339..1152929 (+)	591	WP_014598006.1	YggT family protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 42566.88 Da
• Isoelectric Point: 6.8858

>NTDB_id=278767 C6Y50_RS05345 WP_019405534.1 1148499..1149644(-) (pilU) [Stutzerimonas stutzeri strain 1W1-1A]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVSKTPMSPEMTRETVHGVMNEQQRREFTENHECNFAISARGIGR
FRVSAFYQRNLAGMVLRRIETNIPTIEELKLPDVLKKLSMTKRGLVLFVGATGTGKSTSLASMIGYRNKNSSGHIISIED
PIEFIHQHQNCIVTQREVGIDTSSFEVALKNTLRQAPDVILIGEIRTRETMDYAVAFAETGHLCLATLHANNANQALDRI
INFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKSLMKRSTELGMQTFDQA
LYNLYVQGEITYEDALLHADSANDLRLLIKLGSETDGEHLTSVSQGLSLEVSDEDPGRRFR

Nucleotide

• Length: 1146 bp

>NTDB_id=278767 C6Y50_RS05345 WP_019405534.1 1148499..1149644(-) (pilU) [Stutzerimonas stutzeri strain 1W1-1A]
ATGGAATTCGAGAAACTTCTGCGCCTGATGGTCGAAAAAGGCGGCTCCGATCTGTTCATCACGGCTGGCGTGCCGCCGTC
GATGAAGGTCAACGGCAAGATCATGCCGGTGAGCAAGACGCCCATGTCGCCGGAGATGACCCGGGAAACCGTGCACGGCG
TGATGAACGAGCAGCAGCGCCGCGAGTTCACCGAGAACCACGAATGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGTGTCAGCGCGTTCTATCAGCGAAACCTGGCCGGCATGGTGCTGCGTCGCATCGAGACCAACATCCCGACCATCGA
AGAACTCAAGCTGCCGGACGTCCTGAAGAAGCTGTCGATGACCAAACGTGGTCTGGTGCTGTTCGTCGGCGCCACCGGTA
CCGGCAAGTCGACGTCGCTGGCCTCGATGATCGGCTACCGCAACAAGAACTCCAGCGGGCACATCATCTCCATCGAAGAC
CCGATCGAATTCATCCACCAGCACCAGAATTGCATCGTCACCCAGCGCGAAGTGGGCATCGACACCAGCTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTCATCGGCGAGATCCGTACCCGCGAAACCATGGATTACG
CGGTCGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGCCGGACCGGCACAACCAGGTCTGGATGGACCTGTCGCTCAACCTCAAGGCCATCGTCGCCCAGCA
GCTGGTTCCGACCCCGGACGGCAAGGGTCGTCGTGCGGTCATCGAGGTGCTGATCAATACGCCGCTGGCGGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAATCGCTGATGAAGCGCTCCACCGAGCTGGGTATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTACGTGCAGGGCGAGATCACCTACGAAGATGCCCTGCTGCATGCTGACTCGGCCAACGACCTGCGACT
GCTGATCAAGCTGGGTTCGGAAACCGACGGTGAGCACCTGACCAGCGTATCCCAGGGCCTGAGCCTGGAGGTCAGCGACG
AGGACCCGGGCCGGCGCTTCCGTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	95.013	100	0.95
pilU	Acinetobacter baylyi ADP1	66.106	93.701	0.619
pilU	Vibrio cholerae strain A1552	59.429	91.864	0.546
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.953	88.976	0.391