Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4901_RS14025 Genome accession   NZ_CP027663
Coordinates   2768040..2768516 (-) Length   158 a.a.
NCBI ID   WP_110137864.1    Uniprot ID   -
Organism   Acidiferrobacter sp. SPIII_3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2763040..2773516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4901_RS14000 (C4901_13940) - 2763312..2764112 (+) 801 WP_205736033.1 Druantia anti-phage system protein DruA -
  C4901_RS14005 (C4901_13945) - 2764605..2765354 (-) 750 WP_145960747.1 hypothetical protein -
  C4901_RS14010 (C4901_13950) - 2765946..2766776 (-) 831 WP_110137861.1 hypothetical protein -
  C4901_RS14015 (C4901_13955) - 2766911..2767489 (-) 579 WP_110137862.1 plastocyanin/azurin family copper-binding protein -
  C4901_RS14025 (C4901_13965) ssb 2768040..2768516 (-) 477 WP_110137864.1 single-stranded DNA-binding protein Machinery gene
  C4901_RS14030 (C4901_13970) uvrA 2768834..2771710 (+) 2877 WP_110137865.1 excinuclease ABC subunit UvrA -
  C4901_RS14035 (C4901_13975) - 2771675..2772388 (-) 714 WP_110137866.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  C4901_RS14040 (C4901_13980) - 2772444..2773220 (-) 777 WP_110137867.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 16872.67 Da        Isoelectric Point: 5.0186

>NTDB_id=278757 C4901_RS14025 WP_110137864.1 2768040..2768516(-) (ssb) [Acidiferrobacter sp. SPIII_3]
MARGINKVILVGNLGKDPEIRYVPNGGAVANLNIATSESWKDKATGEKQERTEWHRVVFFGKLAEIASEYLKKGAQIYVE
GRLQTRKWQDKSGQDRYTTEIVGSELQMLGGRGGAGGGEGPPADLSYDSPASGSSGRSTQPSAPAPGGGEDFDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=278757 C4901_RS14025 WP_110137864.1 2768040..2768516(-) (ssb) [Acidiferrobacter sp. SPIII_3]
ATGGCGCGCGGCATCAACAAGGTCATCTTGGTAGGCAATCTCGGCAAGGACCCGGAGATCCGCTACGTACCGAACGGCGG
CGCCGTGGCCAATCTGAATATCGCCACCTCCGAGTCGTGGAAGGACAAGGCGACCGGCGAGAAGCAGGAGCGGACCGAGT
GGCACCGGGTCGTGTTCTTCGGAAAGCTTGCGGAAATCGCGAGCGAGTACCTGAAGAAAGGGGCACAGATCTATGTCGAG
GGACGCCTGCAGACGCGTAAATGGCAGGACAAGTCGGGGCAGGACCGCTACACGACCGAGATCGTGGGTAGCGAACTACA
GATGCTGGGTGGCCGCGGCGGGGCCGGCGGAGGCGAAGGGCCGCCCGCGGACCTGTCTTACGACTCGCCCGCATCCGGCT
CGAGCGGCCGATCGACCCAGCCGTCGGCGCCGGCCCCGGGCGGCGGGGAGGATTTCGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.658
  ssb Glaesserella parasuis strain SC1401

52.809

100

0.595
  ssb Neisseria meningitidis MC58

47.977

100

0.525
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.519

Multiple sequence alignment