Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C7A15_RS03795 Genome accession   NZ_CP027658
Coordinates   793829..795994 (-) Length   721 a.a.
NCBI ID   WP_002116833.1    Uniprot ID   A0A009N281
Organism   Acinetobacter pittii strain Ap-W20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 788829..800994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A15_RS03780 (C7A15_03805) - 791251..792120 (-) 870 WP_002117066.1 hypothetical protein -
  C7A15_RS03785 (C7A15_03810) aroB 792137..793219 (-) 1083 WP_002116776.1 3-dehydroquinate synthase -
  C7A15_RS03790 (C7A15_03815) aroK 793248..793817 (-) 570 WP_002116987.1 shikimate kinase AroK -
  C7A15_RS03795 (C7A15_03820) pilQ 793829..795994 (-) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  C7A15_RS03800 (C7A15_03825) pilP 796057..796584 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  C7A15_RS03805 (C7A15_03830) pilO 796595..797347 (-) 753 WP_002116684.1 type 4a pilus biogenesis protein PilO Machinery gene
  C7A15_RS03810 (C7A15_03835) pilN 797344..797985 (-) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  C7A15_RS03815 (C7A15_03840) pilM 797985..799043 (-) 1059 WP_031945632.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78122.58 Da        Isoelectric Point: 6.3496

>NTDB_id=278712 C7A15_RS03795 WP_002116833.1 793829..795994(-) (pilQ) [Acinetobacter pittii strain Ap-W20]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPMQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLIQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGGNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAQAQDIMSLITQGSNNSNGMQRTSDGGNSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVSGAAPN
GELILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=278712 C7A15_RS03795 WP_002116833.1 793829..795994(-) (pilQ) [Acinetobacter pittii strain Ap-W20]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACTAATATTGTACCGATGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCCTATCAGCTTGAGAATCCTTCACGTTTGATTTTAGATTTTAATAAAGCGCAGCAGAATTTAATACAGTCAAAAGTA
GCGATTGGAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCCGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACTACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAAGCTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGCCTTATCGTT
ATTGACCTGTTGGGAGGTAATACCCCTGTTGATGTGCAACAACAAGGTAGCAAAGTTGTAGTAAGAACGTTAGGCTCTAA
AATTCCTACACATCTAGCTAAACGCTTAAATGTAAATGATTTTGCGACGCCTGTTTCGACCATTGAATCTTATAATGAAA
AAGGCAATGGCGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCAGAAAATAAATTAACCATT
AGCCTCAAGCGTCCGCAGGACAAAAATGTAACCTCTTTATATAAGACGCCTAATTACTCTGGTAATAAGCTTTCTCTCGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAGTTACTTGCTGATTTTACTGGCATTAATATGGTCGCGGCTGATAGTG
TGCAAGGTAATATCACTTTGCGTTTAAAAGATGTACCATGGGACCAAGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGAAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCTGAAGAAGAAGAAGCAAAAGC
TGTTGCACAGAGCGTGAAATTAGCCCCATTACAAACTGAGTATATTCAACTTAAATATGCGCAAGCTCAGGATATTATGA
GTTTAATTACTCAAGGCTCAAATAATAGCAATGGTATGCAGCGCACATCTGATGGTGGAAATTCTACATCTACTAATTTA
AATACTGGTGTTGATAGTTTAGGTAATAATGTAGGAAGTTTATTGAGTCCCCGTGGAACAATTACTCAAGATGATCGTAC
CAATACCTTAATTATTAATGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATCTGTTGGATGTACAAGTTA
AACAGGTTATGGTTGAGGCGCGAATTGTAAGAGCATCTACTTCTTTTACCAAAGAGCTCGGTGTTAAATGGGGTATATTA
TCGCAAGGGATCACTAACAATAATAATTTGTTAGTTGGTGGTAGTGAAACGACCTTGTGGAATTTACGAGAGCCCAAAAA
GGATGAGACTACGGGTGGTTATAAATACACGATTGAACGTCCAGATAACTTAAATGTCGATTTAGGTGTAACCAATCCGG
CTGGGAGTATTGCCTTTGGCTTGATTAGTATGTCTGATTTTATGCTTGATCTTGAACTTTCTGCATTACAAGCTGATGGC
TATGGTGAGGTTATTTCTACCCCTAAAGTAATGACTGCAGATAAACAGCCTGCAAAAGTTGCAACAGGTCAACAGGTCCC
ATATCAAACTACAACGAATTCTGCTGCTGGTGCTACAGCAAGTACCTCTTTTAAAGATGCACTATTAAGCCTAGATGTTA
CCCCGAGTATTACGCCTGATGGTAAAATTCAAATGAAATTGGATATTTCAAAGGATTCGGTTTCGGGTGCGGCTCCTAAT
GGTGAATTGATCCTAAATAAAAATAATATCAAGACAAATGTGTTGGTGAATAATGGTGAGACAGTCATTTTAGGAGGGGT
GTTTGAGCAGACAACCCTTAACTCTCAAACCAAAGTTCCTTTCTTTGGGGATTTACCGGGAATTGGACGCCTATTTAGGA
AAGATCAGAAATCTGATGATAAGCAAGAGTTACTGATTTTCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(40-118)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009N281

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

92.094

100

0.921
  pilQ Acinetobacter baumannii strain A118

91.956

100

0.92
  comQ Acinetobacter baylyi ADP1

74.965

100

0.752
  pilQ Pseudomonas aeruginosa PAK

39.86

99.168

0.395

Multiple sequence alignment