Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C7A17_RS04880 Genome accession   NZ_CP027657
Coordinates   1040189..1041529 (+) Length   446 a.a.
NCBI ID   WP_106736964.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NEB698     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035189..1046529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS04855 (C7A17_04855) pgeF 1035352..1036083 (-) 732 WP_106736959.1 peptidoglycan editing factor PgeF -
  C7A17_RS04860 (C7A17_04860) rluD 1036080..1037054 (-) 975 WP_106736960.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C7A17_RS04865 (C7A17_04865) - 1037193..1038185 (+) 993 WP_106736961.1 outer membrane protein assembly factor BamD -
  C7A17_RS04870 (C7A17_04870) - 1038362..1038604 (+) 243 WP_106736962.1 PP0621 family protein -
  C7A17_RS04875 (C7A17_04875) pilS 1038594..1040186 (+) 1593 WP_106736963.1 PAS domain-containing sensor histidine kinase Regulator
  C7A17_RS04880 (C7A17_04880) pilR 1040189..1041529 (+) 1341 WP_106736964.1 sigma-54 dependent transcriptional regulator Regulator
  C7A17_RS04885 (C7A17_04885) - 1041638..1042399 (-) 762 WP_106736965.1 amino acid ABC transporter ATP-binding protein -
  C7A17_RS04890 (C7A17_04890) - 1042479..1043576 (-) 1098 WP_106736966.1 amino acid ABC transporter permease -
  C7A17_RS04895 (C7A17_04895) - 1043586..1044770 (-) 1185 WP_199796391.1 amino acid ABC transporter permease -
  C7A17_RS04900 (C7A17_04900) - 1045011..1046039 (-) 1029 WP_106736967.1 amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49965.27 Da        Isoelectric Point: 5.6331

>NTDB_id=278671 C7A17_RS04880 WP_106736964.1 1040189..1041529(+) (pilR) [Ectopseudomonas mendocina strain NEB698]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLELVQHIQQRYPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRSPEGEETPVDSRLLGDSPPMKSLRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRVEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEMVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLASVM
LTRLADSTGLAAAKLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQITPSDLRLADASGPNNEGGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=278671 C7A17_RS04880 WP_106736964.1 1040189..1041529(+) (pilR) [Ectopseudomonas mendocina strain NEB698]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAACTGCTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCACGCGAGTGGCTGGCGCGTGAACCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAGCGCTACCCGCAAGTGCCGGTGGCGATG
ATCACTGCCTACGGCAGCCTGGACACCGCGATCAACTCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAACCGGTGGA
TCTCGGCCGCCTGCGCGAACTGGTCGCCACCGCCCTGCGCATCCGCTCCCCCGAGGGCGAGGAAACCCCGGTCGACAGCC
GCCTGCTCGGCGACTCGCCGCCCATGAAATCGCTGCGCAAGCAGATCCAGAAACTCTCGCGCAGCCAGGCACCGGTCTAT
ATCAGCGGTGAGTCAGGCAGCGGCAAGGAACTGGTCGCCCGCCTGATCCACGAGCAGGGCCCGCGCGTCGAACAGCCCTT
CGTCCCGGTCAACTGCGGCGCCATCCCCTCGGAGTTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GTGCCATCGAAGACAAACAGGGCCTGTTCCAGGCGGCCAATGGCGGCACGTTGTTCCTCGATGAAGTTGCCGATCTACCA
CTGCCAATGCAGGTGAAACTGCTGCGTGCGATTCAGGAAAAAGCCGTGCGCGCCGTCGGCGGTCAGCAGGAAATGGTAGT
CGACGTACGCATACTCTGCGCCACCCACAAGGATCTCGCCGCCGAAGTCGCCGCCGGCCGCTTCCGCCAGGATCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGTGAGCGCCGCGAAGACATCGCCCAACTGGCCAGTGTCATG
CTCACGCGCCTGGCCGACAGCACCGGCCTTGCCGCTGCCAAGCTGCATCCCGATGCGTTGGAAAAACTGAAGAACTACCG
CTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCACCCCCA
GCGACCTACGCCTGGCCGACGCCAGCGGCCCCAACAATGAAGGTGGCGAAGCGAGTCTCGCGCAGATCGATAACCTCGAG
GATTACCTCGAAGACATCGAACGCAAGCTGATCATGCAGGCCTTGGAAGAGACACGCTGGAACCGCACGGCCGCCGCCCA
GCGCCTGGGCCTGACCTTCCGCTCGATGCGCTACCGGCTGAAGAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.341

100

0.883
  pilR Acinetobacter baumannii strain A118

49.348

100

0.509
  luxO Vibrio cholerae strain A1552

37.892

100

0.379

Multiple sequence alignment