Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   C7A17_RS04875 Genome accession   NZ_CP027657
Coordinates   1038594..1040186 (+) Length   530 a.a.
NCBI ID   WP_106736963.1    Uniprot ID   A0A2R3QK23
Organism   Ectopseudomonas mendocina strain NEB698     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033594..1045186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS04850 (C7A17_04850) - 1034628..1035230 (-) 603 WP_106736958.1 TetR/AcrR family transcriptional regulator -
  C7A17_RS04855 (C7A17_04855) pgeF 1035352..1036083 (-) 732 WP_106736959.1 peptidoglycan editing factor PgeF -
  C7A17_RS04860 (C7A17_04860) rluD 1036080..1037054 (-) 975 WP_106736960.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C7A17_RS04865 (C7A17_04865) - 1037193..1038185 (+) 993 WP_106736961.1 outer membrane protein assembly factor BamD -
  C7A17_RS04870 (C7A17_04870) - 1038362..1038604 (+) 243 WP_106736962.1 PP0621 family protein -
  C7A17_RS04875 (C7A17_04875) pilS 1038594..1040186 (+) 1593 WP_106736963.1 PAS domain-containing sensor histidine kinase Regulator
  C7A17_RS04880 (C7A17_04880) pilR 1040189..1041529 (+) 1341 WP_106736964.1 sigma-54 dependent transcriptional regulator Regulator
  C7A17_RS04885 (C7A17_04885) - 1041638..1042399 (-) 762 WP_106736965.1 amino acid ABC transporter ATP-binding protein -
  C7A17_RS04890 (C7A17_04890) - 1042479..1043576 (-) 1098 WP_106736966.1 amino acid ABC transporter permease -
  C7A17_RS04895 (C7A17_04895) - 1043586..1044770 (-) 1185 WP_199796391.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59026.18 Da        Isoelectric Point: 8.1916

>NTDB_id=278670 C7A17_RS04875 WP_106736963.1 1038594..1040186(+) (pilS) [Ectopseudomonas mendocina strain NEB698]
MTADLSVQGSPQGRRILRLYHFYRLSIGLALILLISSNLDEQLLDVVHIELFRTGSWVYLILNILIAVLVQRPKHLMQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRIGLLIAAIAAIAMIYLTFYLSLSRPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQVSESLAEQRAADVANLEELNEQILQRMRTGILVLDTQHRVLLANQGATQLLGRGELSGKIID
PHCPELVKRLQQWLHNPTLRPDSLQAQVDGPVLQPSFISLQRGDQQHTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRNSAPND
RQIHLETQGGSLQTRMDPHQLTQVLTNLVQNGLRYSAQKHRLGQVWLRLFRDEASDLPVLEILDDGPGVPPELEQHIFEP
FYTTENKGTGLGLYISRELCQGNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=278670 C7A17_RS04875 WP_106736963.1 1038594..1040186(+) (pilS) [Ectopseudomonas mendocina strain NEB698]
GTGACCGCTGATCTCAGCGTTCAAGGCAGCCCCCAGGGGCGGCGCATCCTCAGGCTCTATCATTTCTATCGCCTGAGCAT
TGGCCTCGCACTGATCCTGCTGATCTCCAGCAACCTCGACGAGCAGTTGCTGGATGTCGTGCATATCGAGCTGTTTCGCA
CCGGCAGTTGGGTCTACCTGATCCTCAATATCCTCATCGCCGTGCTGGTGCAAAGGCCCAAGCACCTGATGCAGCTGTTC
AGCCTGGCACTGGTCGACGTGATCTTCCTCTCCGCCCTGTTCTATGCCGCCGGCGGCACGCCCAGCGGTATCGGCAACCT
GCTGGTGGTCGCCGTGGCCATCGCCAACATCCTGCTGCGTGGGCGCATCGGCCTACTGATCGCTGCCATCGCAGCGATTG
CAATGATCTACCTGACTTTCTACCTCAGCCTCAGCCGACCCGCCGCCGCCGCGCAGTACGTCCAGGCAGGTGCCCTCGGT
GCGCTGTGCTTCGCCGGCGCCCTGTTCATCCAGGGCATCACCCGCCGCCTGCAAGTCAGCGAAAGCCTGGCCGAGCAACG
CGCGGCCGACGTCGCCAACCTGGAAGAACTCAACGAACAGATCCTGCAACGCATGCGTACCGGCATTCTGGTGCTCGATA
CCCAGCATCGCGTGTTGCTGGCCAACCAAGGGGCGACGCAACTGCTCGGACGCGGCGAGCTCAGTGGCAAGATCATCGAC
CCGCACTGCCCCGAGCTGGTCAAGCGCCTACAACAGTGGCTGCACAACCCGACCCTGCGTCCGGACAGCCTGCAGGCGCA
GGTCGACGGCCCGGTGCTGCAACCCAGTTTCATTTCCCTGCAACGCGGCGACCAGCAGCACACCCTGGTGTTTCTCGACG
ACATCTCGCAGATTGCCCAACAAGCGCAGCAGCTCAAGCTGGCTTCGCTCGGCCGCCTGACCGCCGGCATCGCCCACGAG
ATCCGCAACCCACTCGGTGCAATCAGCCACGCCGCACAGCTGCTGCAGGAGTCGGAAGACCTGCAAGGCCCGGATCAGCG
CCTGGCGCAGATCATTCAGGATCACTCCAAGCGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTCTCACGCAGACGCC
AGGCCGAACCTCAGTTGCTCGACCTGAAATACTGGTTGCACCGCTTCGCCAGCGAATTTCGCAACTCGGCGCCGAACGAC
CGGCAGATTCATCTGGAAACCCAGGGCGGCAGCCTGCAGACGCGCATGGATCCGCATCAGCTGACCCAGGTGCTGACCAA
CCTGGTGCAGAACGGCCTTCGCTACAGCGCACAGAAACACCGGCTCGGCCAGGTGTGGCTACGCCTGTTCCGCGACGAAG
CCAGTGACCTGCCGGTGCTGGAGATTCTCGACGACGGTCCCGGCGTGCCGCCCGAGCTGGAGCAGCATATCTTCGAGCCC
TTCTACACCACCGAAAACAAGGGCACCGGCCTGGGCCTGTATATCTCCCGCGAGCTGTGCCAAGGCAACCAGGCCCGCCT
CGACTATAAACCTCGTGAAGGGGGCGGCAGCTGCTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(199-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3QK23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.823

97.925

0.664

Multiple sequence alignment