Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C6Q18_RS27515 Genome accession   NZ_CP027656
Coordinates   6109565..6110077 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. piscium strain ZJU60     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6104565..6115077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Q18_RS27495 (C6Q18_27490) clsB 6105297..6106598 (+) 1302 WP_106698749.1 cardiolipin synthase ClsB -
  C6Q18_RS27500 (C6Q18_27495) - 6106585..6107577 (+) 993 WP_063433180.1 lysylphosphatidylglycerol synthase domain-containing protein -
  C6Q18_RS27505 (C6Q18_27500) - 6107760..6108767 (-) 1008 WP_106698750.1 GlxA family transcriptional regulator -
  C6Q18_RS27510 (C6Q18_27505) - 6108871..6109425 (+) 555 WP_025807822.1 cysteine hydrolase family protein -
  C6Q18_RS27515 (C6Q18_27510) ssb 6109565..6110077 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  C6Q18_RS27520 (C6Q18_27515) - 6110087..6111481 (-) 1395 WP_106698751.1 MFS transporter -
  C6Q18_RS27525 (C6Q18_27520) uvrA 6111662..6114496 (+) 2835 WP_025807824.1 excinuclease ABC subunit UvrA -
  C6Q18_RS27530 (C6Q18_27525) bfr 6114590..6115054 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=278658 C6Q18_RS27515 WP_009045846.1 6109565..6110077(-) (ssb) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=278658 C6Q18_RS27515 WP_009045846.1 6109565..6110077(-) (ssb) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCACAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment