Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C7A06_RS30495 Genome accession   NZ_CP027599
Coordinates   5524628..5525164 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 97-3250     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5519628..5530164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A06_RS30470 soxR 5521356..5521820 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  C7A06_RS30475 soxS 5521906..5522229 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C7A06_RS30480 pdeC 5522232..5523818 (-) 1587 WP_000019526.1 c-di-GMP phosphodiesterase PdeC -
  C7A06_RS30490 yjcB 5524248..5524529 (+) 282 WP_001341690.1 YjcB family protein -
  C7A06_RS30495 ssb 5524628..5525164 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C7A06_RS30500 uvrA 5525418..5528240 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  C7A06_RS30505 yjbR 5528275..5528631 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C7A06_RS30510 yjbQ 5528635..5529051 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C7A06_RS30515 aphA 5529162..5529875 (-) 714 WP_001375558.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=278409 C7A06_RS30495 WP_000168305.1 5524628..5525164(-) (ssb) [Escherichia coli strain 97-3250]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=278409 C7A06_RS30495 WP_000168305.1 5524628..5525164(-) (ssb) [Escherichia coli strain 97-3250]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment