Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C7A04_RS14320 Genome accession   NZ_CP027586
Coordinates   2684568..2685104 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 2012EL-2448     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2679568..2690104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A04_RS14295 aphA 2679857..2680570 (+) 714 WP_001307512.1 acid phosphatase AphA -
  C7A04_RS14300 yjbQ 2680681..2681097 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C7A04_RS14305 yjbR 2681101..2681457 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C7A04_RS14310 uvrA 2681492..2684314 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  C7A04_RS14320 ssb 2684568..2685104 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C7A04_RS14325 yjcB 2685203..2685484 (-) 282 WP_001295689.1 YjcB family protein -
  C7A04_RS14335 pdeC 2685914..2687500 (+) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  C7A04_RS14340 soxS 2687503..2687826 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C7A04_RS14345 soxR 2687912..2688376 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=278343 C7A04_RS14320 WP_000168305.1 2684568..2685104(+) (ssb) [Escherichia coli strain 2012EL-2448]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=278343 C7A04_RS14320 WP_000168305.1 2684568..2685104(+) (ssb) [Escherichia coli strain 2012EL-2448]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATTTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment