Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GTNG_RS17520 Genome accession   NC_009328
Coordinates   3534598..3535092 (-) Length   164 a.a.
NCBI ID   WP_011888458.1    Uniprot ID   A0A0Q0YUR8
Organism   Geobacillus thermodenitrificans NG80-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3529598..3540092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTNG_RS17495 (GTNG_3421) - 3529966..3531105 (+) 1140 WP_008881893.1 tyrosine-type recombinase/integrase -
  GTNG_RS17500 (GTNG_3422) - 3531102..3533216 (+) 2115 WP_011888455.1 tyrosine-type recombinase/integrase -
  GTNG_RS17505 (GTNG_3423) - 3533209..3533589 (+) 381 WP_008881762.1 DUF6262 family protein -
  GTNG_RS17510 (GTNG_3424) - 3533681..3534106 (+) 426 WP_008881761.1 GNAT family N-acetyltransferase -
  GTNG_RS17515 (GTNG_3425) rpsR 3534322..3534558 (-) 237 WP_008880812.1 30S ribosomal protein S18 -
  GTNG_RS17520 (GTNG_3426) ssbA 3534598..3535092 (-) 495 WP_011888458.1 single-stranded DNA-binding protein Machinery gene
  GTNG_RS17525 (GTNG_3427) rpsF 3535122..3535409 (-) 288 WP_008880815.1 30S ribosomal protein S6 -
  GTNG_RS17530 (GTNG_3428) ychF 3535635..3536735 (-) 1101 WP_011888460.1 redox-regulated ATPase YchF -
  GTNG_RS19380 - 3536941..3537249 (-) 309 WP_049756683.1 molybdopterin dinucleotide binding domain-containing protein -
  GTNG_RS19675 - 3537634..3537966 (-) 333 WP_049756684.1 molybdopterin-dependent oxidoreductase -
  GTNG_RS19680 - 3537991..3538077 (-) 87 WP_412728478.1 hypothetical protein -
  GTNG_RS17540 (GTNG_3431) - 3538178..3538375 (-) 198 WP_008880819.1 DUF951 domain-containing protein -
  GTNG_RS17545 (GTNG_3432) - 3538394..3539293 (-) 900 WP_008880820.1 mechanosensitive ion channel family protein -
  GTNG_RS17550 (GTNG_3433) yyaC 3539467..3540090 (+) 624 WP_008880821.1 spore protease YyaC -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18394.33 Da        Isoelectric Point: 4.7055

>NTDB_id=27830 GTNG_RS17520 WP_011888458.1 3534598..3535092(-) (ssbA) [Geobacillus thermodenitrificans NG80-2]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADNVQFLEPKGSNEQRGAAAGGYYGDPFPFGQDQNHRYPNEKGIGRIDEDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=27830 GTNG_RS17520 WP_011888458.1 3534598..3535092(-) (ssbA) [Geobacillus thermodenitrificans NG80-2]
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAGAGATCCGGAGTTGCGCTACACTCCAAGCGGAGTGGCTGTTGC
CACATTTACGCTCGCGGTCAACCGCCCGTTCACAAACCAGCAGGGCGAGCGTGAAGCTGATTTTATCCAATGTGTTGTTT
GGCGTCGCCAGGCAGAAAACGTCGCTAACTTCTTAAAAAAAGGAAGCTTAGCCGGAGTGGACGGCCGGCTGCAAACTCGC
AGCTATGAAAACCAAGAAGGCCGGCGCGTGTATGTGACGGAAGTGGTGGCTGATAACGTCCAATTTCTTGAGCCAAAAGG
AAGCAACGAGCAACGTGGGGCAGCAGCAGGCGGCTACTATGGGGATCCGTTCCCATTCGGACAAGATCAGAACCACCGAT
ACCCGAACGAAAAAGGGATTGGCCGCATTGATGAAGATCCTTTCGCCAATGACGGCCAACCGATCGATATTTCTGACGAC
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0YUR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68

100

0.726
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

64.634

0.415
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.366

Multiple sequence alignment