Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C6Y56_RS24505 Genome accession   NZ_CP027561
Coordinates   5382442..5383788 (+) Length   448 a.a.
NCBI ID   WP_169431970.1    Uniprot ID   A0A7Z3H1X6
Organism   Pseudomonas fluorescens strain G7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5377442..5388788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS24480 (C6Y56_24750) pgeF 5377623..5378372 (-) 750 WP_169431966.1 peptidoglycan editing factor PgeF -
  C6Y56_RS24485 (C6Y56_24755) rluD 5378369..5379331 (-) 963 WP_011335991.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6Y56_RS24490 (C6Y56_24760) - 5379484..5380506 (+) 1023 WP_169431967.1 outer membrane protein assembly factor BamD -
  C6Y56_RS24495 (C6Y56_24765) - 5380633..5380866 (+) 234 WP_169431968.1 PP0621 family protein -
  C6Y56_RS24500 (C6Y56_24770) pilS 5380856..5382445 (+) 1590 WP_169431969.1 ATP-binding protein Regulator
  C6Y56_RS24505 (C6Y56_24775) pilR 5382442..5383788 (+) 1347 WP_169431970.1 sigma-54 dependent transcriptional regulator Regulator
  C6Y56_RS24510 (C6Y56_24780) thiO 5383785..5384885 (-) 1101 WP_169431971.1 glycine oxidase ThiO -
  C6Y56_RS24515 (C6Y56_24785) - 5384943..5385344 (-) 402 WP_169431972.1 type IV pilin protein -
  C6Y56_RS24520 (C6Y56_24790) - 5385359..5388451 (-) 3093 WP_169431973.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50075.31 Da        Isoelectric Point: 6.5105

>NTDB_id=278138 C6Y56_RS24505 WP_169431970.1 5382442..5383788(+) (pilR) [Pseudomonas fluorescens strain G7]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLSRDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLSRLRELVATALRMSASGNVCTAIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
SHMLKRLANGTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEADDLRLSEGNCTAEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=278138 C6Y56_RS24505 WP_169431970.1 5382442..5383788(+) (pilR) [Pseudomonas fluorescens strain G7]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAACCTCGGCGAAGCCCAAGCGCTGCTGAGCCGCGATACTTTCGATCTGT
GCCTGACCGACATGCGCCTGCCGGATGGCACCGGACTGGAGCTGGTGCAGCACATCCAGCAACGCTATCCACAATTGCCG
GTGGCGATGATCACCGCCTATGGCAGTCTGGAAACGGCGATCAACGCCCTGAAAGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTAGACCTCAGTCGTCTGCGGGAACTGGTCGCCACTGCGTTGCGCATGTCGGCGTCGGGCAATGTCTGCACCGCGA
TTGATCGCCGGCTGCTCGGTGACTCGCTGCCCATGCGCAATCTGCGCAAGCAGATCGATAAACTGGCCCGCAGTCAGGCG
CCGGTCTACATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTTGCCCGGCTGATTCACGAGCAAGGCCCACGCGCCAG
CCAGCCGTTTGTACCGGTGAACTGTGGGGCGATTCCTTCAGAGTTGATGGAAAGCGAATTCTTCGGTCACCGCAAAGGCA
GTTTCACGGGTGCGGTGGAGGATAAGCCGGGCCTGTTCCAGGCTGCCCATGGCGGGACGCTGTTTCTTGATGAAGTGGCA
GACTTGCCGCTGTCGATGCAGGTCAAGTTGCTGCGGGCGATTCAGGAAAAGGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGTGCGACGCACAAGGATCTCGACGCGGAAGTCGCCGCCGAACGCTTTCGTCAGG
ACCTGTATTACCGACTGAACGTGATCGAACTGCGGGTGCCCTCTCTGCGCGAACGTCGTGACGATATCGAAGCCTTGGCC
AGCCATATGCTCAAGCGTCTGGCGAACGGTACCGGCCAGCCGGCGGCGCGCCTGCATCCACAAGCGCTGGAGGCATTGAA
GAACTACCGCTTCCCGGGAAATGTGCGGGAGCTGGAGAACGTGCTTGAGAGGGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCCGACGACCTGCGCCTGAGCGAAGGCAATTGCACAGCCGAGGGCGGCATTGCCGATCTCACGCAGATCGACAAC
CTCGAAGACTATCTGGAGAACGTCGAGCGCAAGCTGATACTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCAGC
GGCCCAGCGGTTGAATCTGTCCTTCCGTTCGATGCGCTACCGGCTCAAGAAGCTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z3H1X6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.458

98.884

0.786
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507
  luxO Vibrio cholerae strain A1552

37.387

99.107

0.371

Multiple sequence alignment