Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   C6Y56_RS24500 Genome accession   NZ_CP027561
Coordinates   5380856..5382445 (+) Length   529 a.a.
NCBI ID   WP_169431969.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5375856..5387445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS24480 (C6Y56_24750) pgeF 5377623..5378372 (-) 750 WP_169431966.1 peptidoglycan editing factor PgeF -
  C6Y56_RS24485 (C6Y56_24755) rluD 5378369..5379331 (-) 963 WP_011335991.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6Y56_RS24490 (C6Y56_24760) - 5379484..5380506 (+) 1023 WP_169431967.1 outer membrane protein assembly factor BamD -
  C6Y56_RS24495 (C6Y56_24765) - 5380633..5380866 (+) 234 WP_169431968.1 PP0621 family protein -
  C6Y56_RS24500 (C6Y56_24770) pilS 5380856..5382445 (+) 1590 WP_169431969.1 ATP-binding protein Regulator
  C6Y56_RS24505 (C6Y56_24775) pilR 5382442..5383788 (+) 1347 WP_169431970.1 sigma-54 dependent transcriptional regulator Regulator
  C6Y56_RS24510 (C6Y56_24780) thiO 5383785..5384885 (-) 1101 WP_169431971.1 glycine oxidase ThiO -
  C6Y56_RS24515 (C6Y56_24785) - 5384943..5385344 (-) 402 WP_169431972.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58756.69 Da        Isoelectric Point: 7.2751

>NTDB_id=278137 C6Y56_RS24500 WP_169431969.1 5380856..5382445(+) (pilS) [Pseudomonas fluorescens strain G7]
MIAEATNATRRQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDELLRNGSWLYLVLNILLVVFLENIRRPARLF
GLALVDILLLCGLFYAAGGVASPVGNLLIVSVAISNTLLRRRIGVLIAAIGALGIVGLSFLLSFSHPLSANDYLQAGTLG
ALCFAGALLVQGLIRRLEISETLAEQRASEVVSLEALNALILQRMRTGILVLDERRRVQLANHSARTLLAQSPLEGQLID
DYSTALVERLNLWLNNPTLRPQSLKIAANGLELQPSFIALEQSPNRQTLVFLEDLAQISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLEPWLAQFVAEAREQAGER
QRIHLRIDSGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLTLFIDRESQLAVLEVQDNGPGVALDQQSHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFIPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=278137 C6Y56_RS24500 WP_169431969.1 5380856..5382445(+) (pilS) [Pseudomonas fluorescens strain G7]
GTGATCGCTGAGGCCACCAACGCCACACGCAGACAGGCCCAGCGACTGCTGCGCCTTTATCACCTCTACCGCCTGAGCGT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCAGCCGATGACGAGTTGCTGCGCA
ACGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTGGAGAACATCCGGCGGCCGGCCCGGTTGTTC
GGCCTGGCCCTGGTCGACATCCTGCTGCTGTGCGGGCTGTTCTACGCCGCCGGCGGCGTGGCCAGCCCGGTGGGCAATCT
GCTGATCGTCTCGGTGGCCATCAGCAACACCCTGCTGCGACGACGGATCGGTGTGCTGATCGCAGCGATCGGGGCGCTCG
GCATCGTCGGCCTCAGTTTTCTGCTGAGCTTCAGCCATCCCTTGAGCGCCAATGACTACCTGCAGGCAGGCACCCTTGGC
GCTCTGTGTTTTGCCGGAGCACTGTTGGTACAGGGGTTGATCCGTCGTCTCGAAATCAGCGAAACCCTGGCCGAGCAACG
GGCCAGCGAAGTGGTCAGCCTTGAAGCGCTCAATGCCTTGATCCTGCAGCGCATGCGCACCGGCATTCTGGTACTCGACG
AGCGGCGCCGGGTACAACTGGCCAACCACAGCGCCCGGACGCTGCTGGCACAGTCACCCCTCGAAGGCCAGTTGATCGAT
GACTATTCGACCGCGCTGGTCGAGCGCCTGAATCTGTGGCTGAACAACCCGACCCTGCGCCCGCAGAGCCTGAAAATCGC
GGCCAACGGCCTGGAACTGCAACCGAGCTTCATTGCCCTGGAACAGAGCCCGAACCGCCAGACCCTGGTATTTCTCGAGG
ACCTGGCGCAGATTTCCCAGCAAGCCCAGCAACTGAAGCTCGCCGCACTCGGGCGTCTGACCGCCGGTATCGCCCACGAA
ATCCGCAACCCGCTGGGCGCCATCAGCCATGCGGCGCAGCTGCTGCAGGAGTCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACGCAGATCATCCAGGATCACTCCCAGCGCATGAACCGAGTCATTGAAAACGTCCTGCAACTGTCCCGACGCCAGC
AGAGCGCGCCGCAACGGCTGGATCTGGAACCGTGGCTGGCGCAGTTCGTCGCCGAAGCCCGGGAACAGGCCGGCGAGCGC
CAGCGGATACATTTGCGTATCGACTCCGGGGACTTTCGCACCCTCATGGACCCCGGTCAGTTGACGCAAATTCTCGACAA
TCTGTTGCGCAACGGCTGGCGTCACAGCGCCCTGCTGCACGATCCGGCCGAAGTGTGGCTGACGCTGTTCATCGACCGCG
AAAGCCAGCTGGCTGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGGCACTGGATCAACAGTCGCATCTGTTCGAGCCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGACTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCATACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595

Multiple sequence alignment