Detailed information NTG0278131

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C6Y56_RS20745
• Genome accession: NZ_CP027561
• Coordinates: 4595635..4597878 (-)
• Length: 747 a.a.
• NCBI ID: WP_169431445.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain G7
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4590635..4602878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6Y56_RS20710 (C6Y56_20980)	murB	4591024..4592043 (-)	1020	WP_169431442.1	UDP-N-acetylmuramate dehydrogenase	-
C6Y56_RS20715 (C6Y56_20985)	-	4592040..4592504 (-)	465	WP_169431443.1	low molecular weight protein-tyrosine-phosphatase	-
C6Y56_RS20720 (C6Y56_20990)	kdsB	4592504..4593268 (-)	765	WP_064383500.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C6Y56_RS20725 (C6Y56_20995)	-	4593265..4593450 (-)	186	WP_003174668.1	Trm112 family protein	-
C6Y56_RS20730 (C6Y56_21000)	lpxK	4593475..4594485 (-)	1011	WP_169431444.1	tetraacyldisaccharide 4'-kinase	-
C6Y56_RS20735 (C6Y56_21005)	-	4594485..4594913 (-)	429	WP_085745066.1	biopolymer transporter ExbD	-
C6Y56_RS20740 (C6Y56_21010)	exbB	4594910..4595545 (-)	636	WP_162803506.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C6Y56_RS20745 (C6Y56_21015)	comA	4595635..4597878 (-)	2244	WP_169431445.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C6Y56_RS20750 (C6Y56_21020)	-	4598015..4598533 (+)	519	WP_169431446.1	DUF2062 domain-containing protein	-
C6Y56_RS20755 (C6Y56_21025)	-	4598586..4599365 (-)	780	WP_085710947.1	ABC transporter permease	-
C6Y56_RS20760 (C6Y56_21030)	-	4599362..4600294 (-)	933	WP_169431447.1	ABC transporter ATP-binding protein	-
C6Y56_RS20765 (C6Y56_21035)	-	4600426..4601049 (-)	624	WP_169431448.1	glutathione S-transferase	-
C6Y56_RS20770 (C6Y56_21040)	-	4601093..4601752 (-)	660	WP_169431449.1	transglutaminase family protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 81742.96 Da
• Isoelectric Point: 10.0119

>NTDB_id=278131 C6Y56_RS20745 WP_169431445.1 4595635..4597878(-) (comA) [Pseudomonas fluorescens strain G7]
MRTGMMALAVGLLAPVFLPALPPVGWVLLLPVVALMLLPFRSYPLAFLLFGFVWSCIGAQWALDDRLPLELDGETRWVEG
RVVGLPQSGDGVVRFELADARSRHGKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGNRLAAAQWAWRDGIRQRLLEVDTQGRGAALTALVLGDGSGLGREDWQILQDTGTVHLLVISGQHIGLLAAVMYGL
IAGLARFGLWPLRWPWLPWACGLAFSAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFTAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLLIQGLPISLSGPLANLLAVPWISFAVLPPAL
LGTLLLPIPYIGEGLLWLAGGLVDGLFRALALIAGRWPAWVAVSMPGWILALGCIGAVLLLLPRGVPLRPLGWPLLLVLA
LPPRERLAEGVADVWQLDVGQGLAILIRTRHHTLLYDTGPRFGDFDVGERVVLPALHKLGVARLDLMLLSHADADHAGGA
LAVANGLPVSRVISGDPPGLPEALSAETCESGRQWQWDGVAFHLWQWAGAQDSNQRSCVLQIEANGERLLLTGDIDTAAE
RDLLNSVLAVPTQWLQAPHHGSRSSSSMALLKVLQPRDVLISRGHGNSFGHPHPTVIARYRKLGLRIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWREPPLPGAEYR

Nucleotide

• Length: 2244 bp

>NTDB_id=278131 C6Y56_RS20745 WP_169431445.1 4595635..4597878(-) (comA) [Pseudomonas fluorescens strain G7]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCGTTGCCGCCGGTCGGATGGGT
GCTGTTGCTGCCGGTGGTGGCACTGATGCTGTTGCCGTTTCGCAGCTATCCGCTGGCATTTTTGCTGTTCGGCTTCGTCT
GGTCGTGCATCGGTGCGCAGTGGGCGCTGGATGATCGGCTGCCGCTGGAGCTGGATGGTGAAACGCGCTGGGTGGAGGGG
CGGGTGGTCGGCCTGCCGCAGAGCGGCGACGGGGTCGTGCGGTTTGAACTGGCCGATGCCCGTTCGCGTCACGGGAAACT
GCCATCGCTGATGCGCCTGGCCTGGTACGCCGGGCCACCGGTCAACAGTGGCGAGCGCTGGAGGCTGGCCGTGAAACTCA
AGCGTCCCGGCGGGCTGCTCAATCCCGATGCCTTCGATTACGAAGCCTGGCTGTTGGCGCAACGCATCGGCGCCACCGGC
ACGGTGAAGGACGGCAACCGGCTGGCGGCGGCGCAGTGGGCCTGGCGGGACGGCATCCGACAGCGCCTGCTGGAAGTGGA
CACTCAGGGGCGGGGCGCAGCGCTGACGGCGTTGGTGCTGGGTGACGGCTCGGGACTCGGTCGCGAGGACTGGCAGATCC
TGCAGGACACCGGCACCGTGCACCTGTTGGTGATTTCCGGACAGCACATCGGTCTGCTGGCGGCGGTGATGTATGGGCTG
ATCGCCGGGCTGGCGCGATTCGGTCTGTGGCCATTGCGTTGGCCATGGCTGCCGTGGGCGTGTGGTCTCGCATTCTCGGC
GGCGCTGGGTTACGGCTTGCTGGCAGGATTCGATGTGCCGGTACGGCGGGCCTGTGTGATGGTTGCGCTGGTGTTGCTGT
GGCGATTGCGATTTCGCCATCTGGGTGCCTGGTGGCCGTTGTTGCTGGCCTTCAACGGGGTGTTGTTGATGGACCCGCTG
GCCAGTCTGCGTCCAGGATTATGGCTGTCCTTCACGGCGGTGGCGGTGCTGATTTTTACCTTCGGCGGTCGTCTGGGGCC
GTGGCGCTGGTGGCAGACCTGGACGCGAGCCCAATGGCTGATCGCAATCGGTTTGTGCCCGGTGTTGCTGATCCAGGGCC
TGCCGATCAGCCTCAGCGGACCATTGGCCAATCTGCTGGCGGTACCGTGGATCAGTTTTGCGGTGCTCCCGCCGGCGTTG
CTTGGCACTTTGTTGTTGCCGATTCCCTATATCGGCGAAGGTCTGTTATGGCTGGCCGGCGGGCTGGTCGATGGATTGTT
CCGGGCTCTGGCCTTGATTGCCGGGCGCTGGCCGGCATGGGTTGCAGTCTCGATGCCGGGATGGATCCTGGCTCTGGGCT
GCATCGGTGCCGTGCTGTTGTTGCTGCCCCGAGGTGTTCCATTGCGTCCCTTGGGCTGGCCCTTGCTGCTGGTGCTGGCA
TTGCCGCCCCGGGAGCGACTGGCCGAAGGTGTGGCGGATGTCTGGCAACTCGACGTCGGCCAGGGATTGGCGATTCTGAT
CCGCACCCGTCACCACACATTGCTGTACGACACTGGCCCGCGTTTCGGCGATTTCGACGTCGGTGAGCGCGTAGTGTTGC
CGGCCTTGCACAAACTGGGTGTGGCGCGACTGGACCTGATGCTGCTCAGTCATGCCGACGCCGACCATGCCGGTGGGGCA
CTGGCCGTGGCAAACGGCTTGCCGGTCAGCCGGGTGATCAGCGGCGATCCGCCAGGGCTGCCCGAAGCGCTGAGCGCTGA
AACCTGTGAAAGCGGTCGGCAATGGCAGTGGGACGGCGTTGCCTTCCATCTATGGCAGTGGGCCGGCGCACAAGACAGCA
ACCAGCGCTCCTGCGTCCTGCAGATCGAAGCCAACGGCGAGCGGTTGCTGCTGACCGGCGATATCGACACCGCTGCCGAA
CGGGACTTGCTCAATAGCGTGCTGGCGGTTCCGACTCAATGGCTGCAGGCCCCGCACCATGGCAGCCGCAGTTCCTCATC
AATGGCGTTGCTCAAGGTTTTGCAGCCGCGGGACGTGCTGATCTCCCGGGGGCACGGCAACTCGTTCGGGCATCCGCATC
CGACGGTCATCGCCCGTTACCGCAAGCTGGGCCTGCGCATCCATGACAGCGCGGAGCAGGGTGCCATTCATCTGCAACTG
GGCAGATTCCAGCCGGCCCGGTCTATGCGTCAGCAGCGCCGGTTCTGGCGAGAGCCGCCGCTGCCGGGGGCCGAGTACCG
TTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.031	96.252	0.597
comA	Ralstonia pseudosolanacearum GMI1000	34.557	100	0.365