Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C6Y56_RS20740 Genome accession   NZ_CP027561
Coordinates   4594910..4595545 (-) Length   211 a.a.
NCBI ID   WP_162803506.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4589910..4600545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS20705 (C6Y56_20975) - 4590308..4590778 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  C6Y56_RS20710 (C6Y56_20980) murB 4591024..4592043 (-) 1020 WP_169431442.1 UDP-N-acetylmuramate dehydrogenase -
  C6Y56_RS20715 (C6Y56_20985) - 4592040..4592504 (-) 465 WP_169431443.1 low molecular weight protein-tyrosine-phosphatase -
  C6Y56_RS20720 (C6Y56_20990) kdsB 4592504..4593268 (-) 765 WP_064383500.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6Y56_RS20725 (C6Y56_20995) - 4593265..4593450 (-) 186 WP_003174668.1 Trm112 family protein -
  C6Y56_RS20730 (C6Y56_21000) lpxK 4593475..4594485 (-) 1011 WP_169431444.1 tetraacyldisaccharide 4'-kinase -
  C6Y56_RS20735 (C6Y56_21005) - 4594485..4594913 (-) 429 WP_085745066.1 biopolymer transporter ExbD -
  C6Y56_RS20740 (C6Y56_21010) exbB 4594910..4595545 (-) 636 WP_162803506.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6Y56_RS20745 (C6Y56_21015) comA 4595635..4597878 (-) 2244 WP_169431445.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6Y56_RS20750 (C6Y56_21020) - 4598015..4598533 (+) 519 WP_169431446.1 DUF2062 domain-containing protein -
  C6Y56_RS20755 (C6Y56_21025) - 4598586..4599365 (-) 780 WP_085710947.1 ABC transporter permease -
  C6Y56_RS20760 (C6Y56_21030) - 4599362..4600294 (-) 933 WP_169431447.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22858.96 Da        Isoelectric Point: 7.3615

>NTDB_id=278130 C6Y56_RS20740 WP_162803506.1 4594910..4595545(-) (exbB) [Pseudomonas fluorescens strain G7]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=278130 C6Y56_RS20740 WP_162803506.1 4594910..4595545(-) (exbB) [Pseudomonas fluorescens strain G7]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCGATCGTCGC
GGAGCGCCTGTGGACGCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCCGCCGCCCGGGTCATCCACGAGCTGGAGCGTTACGT
CAATGCGCTGGGCACCATCGCCGCCATGTCGCCGTTGCTGGGTCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCTTCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCA
GCGGGTCTGATGGTCGGTATCCCGTCGGTATTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment