Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MSR1_RS06270 Genome accession   NZ_CP027526
Coordinates   1249210..1249767 (+) Length   185 a.a.
NCBI ID   WP_106001871.1    Uniprot ID   -
Organism   Magnetospirillum gryphiswaldense MSR-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1244210..1254767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSR1_RS06250 (MSR1_12570) - 1244796..1245335 (-) 540 WP_024079252.1 peptidylprolyl isomerase -
  MSR1_RS06255 (MSR1_12580) - 1245340..1245819 (-) 480 WP_024079251.1 peptidylprolyl isomerase -
  MSR1_RS06260 (MSR1_12590) coaD 1245857..1246366 (-) 510 WP_041633455.1 pantetheine-phosphate adenylyltransferase -
  MSR1_RS06265 (MSR1_12600) gyrA 1246359..1248983 (-) 2625 WP_234016422.1 DNA gyrase subunit A -
  MSR1_RS06270 (MSR1_12610) ssb 1249210..1249767 (+) 558 WP_106001871.1 single-stranded DNA-binding protein Machinery gene
  MSR1_RS06275 (MSR1_12620) - 1249834..1250511 (-) 678 WP_106001872.1 hypothetical protein -
  MSR1_RS06280 (MSR1_12630) - 1250566..1252350 (-) 1785 WP_106001873.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18838.55 Da        Isoelectric Point: 5.3338

>NTDB_id=277692 MSR1_RS06270 WP_106001871.1 1249210..1249767(+) (ssb) [Magnetospirillum gryphiswaldense MSR-1]
MAGSVNKVILVGNLGRDPEVRTAQDGSKIVNLNIATSESWKDRSSGERREKTEWHRVVIFNPNLADVAERFLRKGSSVYI
EGALQTRKWTDQQGVEKYSTEVVIGRFKGELTLLGGRGEGGGGQGGGGGYDDGGYGGGQGGGGYGGGGGGAPRSGGGAPR
SGGGGGAGGGSGWEPPPDLDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=277692 MSR1_RS06270 WP_106001871.1 1249210..1249767(+) (ssb) [Magnetospirillum gryphiswaldense MSR-1]
ATGGCTGGGTCCGTCAACAAAGTCATTCTGGTCGGCAATCTGGGACGCGACCCCGAGGTCCGTACCGCCCAGGATGGCTC
GAAGATCGTCAATCTGAACATCGCCACCTCGGAATCCTGGAAGGACCGGTCCAGCGGCGAACGCCGGGAAAAGACCGAAT
GGCACCGCGTGGTGATCTTCAACCCCAATCTGGCCGATGTGGCCGAGCGCTTTTTGCGCAAGGGCTCCAGCGTCTATATC
GAAGGGGCGTTGCAGACCCGCAAATGGACCGACCAACAGGGCGTGGAAAAGTATTCCACCGAAGTGGTCATCGGTCGCTT
CAAGGGTGAACTGACCTTGCTGGGCGGTCGCGGCGAAGGCGGCGGCGGCCAGGGCGGTGGCGGCGGCTACGATGATGGCG
GCTATGGTGGCGGCCAAGGTGGTGGCGGCTACGGTGGTGGTGGTGGTGGCGCCCCGCGTTCGGGCGGCGGTGCCCCGCGC
TCGGGTGGCGGTGGCGGCGCGGGCGGCGGCTCGGGCTGGGAACCGCCGCCGGATCTGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.455

100

0.486
  ssb Vibrio cholerae strain A1552

46.739

99.459

0.465
  ssb Neisseria meningitidis MC58

38.378

100

0.384
  ssb Neisseria gonorrhoeae MS11

38.378

100

0.384

Multiple sequence alignment