Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MMARC5_RS08375 Genome accession   NC_009135
Coordinates   1579886..1580782 (+) Length   298 a.a.
NCBI ID   WP_011869386.1    Uniprot ID   -
Organism   Methanococcus maripaludis C5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574886..1585782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMARC5_RS08355 (MmarC5_1638) - 1575824..1576105 (+) 282 WP_011869382.1 Gar1/Naf1 family protein -
  MMARC5_RS08360 (MmarC5_1639) - 1576124..1577143 (+) 1020 WP_011869383.1 transcription initiation factor IIB -
  MMARC5_RS08365 (MmarC5_1640) epdL 1577153..1578811 (+) 1659 WP_011869384.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  MMARC5_RS08370 (MmarC5_1641) epdK 1578823..1579881 (+) 1059 WP_011869385.1 type II secretion system F family protein Machinery gene
  MMARC5_RS08375 (MmarC5_1642) epdJ 1579886..1580782 (+) 897 WP_011869386.1 type II secretion system F family protein Machinery gene
  MMARC5_RS08380 (MmarC5_1643) - 1580789..1581373 (-) 585 WP_011869387.1 HDIG domain-containing metalloprotein -
  MMARC5_RS08385 (MmarC5_1644) tfe 1581383..1581940 (-) 558 WP_011869388.1 transcription factor E -
  MMARC5_RS08390 (MmarC5_1645) - 1581944..1582993 (-) 1050 WP_011869389.1 ATP-grasp domain-containing protein -
  MMARC5_RS08395 (MmarC5_1646) mptA 1583020..1583967 (-) 948 WP_011869390.1 GTP cyclohydrolase MptA -
  MMARC5_RS08400 (MmarC5_1647) - 1583988..1585214 (-) 1227 WP_011869391.1 AAA family ATPase -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32962.67 Da        Isoelectric Point: 9.9656

>NTDB_id=27738 MMARC5_RS08375 WP_011869386.1 1579886..1580782(+) (epdJ) [Methanococcus maripaludis C5]
MDVKKYLDHFYHVLIIRNLRILKKTGRKLDERVFIGILLIITVLPILLKIFLGFTLKTTLILTFVYLGSVLSLPTIMYES
KMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVTLMTERKLSFEDAMILVSNSLDSKIFRQVGR
LIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPTMPSVEASQ
ISKAIETIQIGSGLFGLFFAVPLFGLKINRMIITCSICMTFAIATFYAVLRLTGMLFA

Nucleotide


Download         Length: 897 bp        

>NTDB_id=27738 MMARC5_RS08375 WP_011869386.1 1579886..1580782(+) (epdJ) [Methanococcus maripaludis C5]
ATGGATGTCAAAAAATACCTAGATCATTTTTACCATGTTTTGATTATAAGGAATTTGAGAATACTGAAAAAAACAGGTCG
AAAACTTGATGAACGGGTATTTATAGGTATTTTGTTAATCATTACTGTTTTGCCGATTTTGTTGAAAATATTCTTAGGTT
TCACATTAAAAACCACATTAATATTGACTTTCGTATATTTAGGTTCTGTTCTTTCACTACCTACAATAATGTATGAATCT
AAAATGGATAAATTTGACAAAAATATACCAAAAGCCCTTTATGTGATGGTTTTATCACTTGATTCTGGACGTTCTGTTGT
TGAAGCGATAAATGAAGTTATAAGAAGTGGAATTCCTGAAGTAGATGTCGTATTCTCAAAAGTAGTCACTTTGATGACTG
AAAGAAAATTGAGTTTTGAAGATGCAATGATTCTTGTTTCAAATTCACTTGATTCAAAGATTTTCAGGCAGGTTGGAAGG
TTGATTATTGAAAATAGAAAGTATGGTGGGGAACTTGCAGATACATTGAAAAAACTTGCTAAAACACTTGAAGATCTCCA
GAATTTAAAGTCCCAGCTTATGAGTGTAACTGCAAATGGTCTTGCTGTTGGTCTTATTATTCTTTGTGGTGTGATTCCTG
CAACTGCAGGTTTGATAGGTGGTTATTTAACCGTTATATCACAATTAGCACCAACAATGCCTTCGGTTGAAGCTTCGCAG
ATTTCAAAAGCTATTGAAACGATTCAGATAGGTTCTGGATTATTCGGACTCTTCTTTGCAGTTCCTTTGTTTGGTTTAAA
AATTAATAGGATGATAATTACTTGTTCAATATGTATGACTTTTGCAATTGCCACATTTTACGCCGTTTTAAGACTTACTG
GAATGTTATTTGCTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(94-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

94.631

100

0.946

Multiple sequence alignment