Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   MMARC5_RS08365 Genome accession   NC_009135
Coordinates   1577153..1578811 (+) Length   552 a.a.
NCBI ID   WP_011869384.1    Uniprot ID   A4G0F3
Organism   Methanococcus maripaludis C5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1572153..1583811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMARC5_RS08345 (MmarC5_1636) - 1572852..1574198 (-) 1347 WP_011869380.1 RNase J family beta-CASP ribonuclease -
  MMARC5_RS08350 (MmarC5_1637) fni 1574270..1575337 (-) 1068 WP_011869381.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  MMARC5_RS08355 (MmarC5_1638) - 1575824..1576105 (+) 282 WP_011869382.1 Gar1/Naf1 family protein -
  MMARC5_RS08360 (MmarC5_1639) - 1576124..1577143 (+) 1020 WP_011869383.1 transcription initiation factor IIB -
  MMARC5_RS08365 (MmarC5_1640) epdL 1577153..1578811 (+) 1659 WP_011869384.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  MMARC5_RS08370 (MmarC5_1641) epdK 1578823..1579881 (+) 1059 WP_011869385.1 type II secretion system F family protein Machinery gene
  MMARC5_RS08375 (MmarC5_1642) epdJ 1579886..1580782 (+) 897 WP_011869386.1 type II secretion system F family protein Machinery gene
  MMARC5_RS08380 (MmarC5_1643) - 1580789..1581373 (-) 585 WP_011869387.1 HDIG domain-containing metalloprotein -
  MMARC5_RS08385 (MmarC5_1644) tfe 1581383..1581940 (-) 558 WP_011869388.1 transcription factor E -
  MMARC5_RS08390 (MmarC5_1645) - 1581944..1582993 (-) 1050 WP_011869389.1 ATP-grasp domain-containing protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62137.48 Da        Isoelectric Point: 6.4466

>NTDB_id=27736 MMARC5_RS08365 WP_011869384.1 1577153..1578811(+) (epdL) [Methanococcus maripaludis C5]
MGLFDRIQNKDSKPNVAKKNNSSENVSGTPNLFDKTEKVEQKKTEIKMGFSVSDKVKKQPVETFERESTGSVLDKYFVKV
DDIDFDVIIEKEDGITKYKIPEITLMNTALAKFSDLDIKTIKSELSESTIQKIGQIQGYIKNYSEKNNLHLRDIEILHLS
HYFYLIIGKLGLLEIPLNDSKLEEVMVNGVELPAFVFHRKYQMCETNVRLDRHEATRVVESIAYLAGRSIDSRTPMLDAF
LPDGSRVNATMGDVTLKGNTITIHKFSEDPLTIVDLINFGTFDLELAAFLWQAVEGYFGAKPANTLIVGGTGSGKTTTLN
VVSMFSMYTDRIVTIEDTPELQVPLTHLIKMITRPGRPGVQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAMN
TGHDGCSGTLHANSADEAIIRLVNPPMNVPKVMMSSIDFIINQQRIKRNKKTVRRILGVVEIGGSGENITKTELFKYDGI
SDSVVKTGICMWEEDVCQIAGITRDELMDDRINRKKVLKYMVNNNISDIKKVGDVIKQYQENPENVLKHMLE

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=27736 MMARC5_RS08365 WP_011869384.1 1577153..1578811(+) (epdL) [Methanococcus maripaludis C5]
ATGGGGCTTTTTGACAGGATTCAAAATAAAGATTCTAAACCCAATGTCGCTAAAAAGAATAATAGTTCTGAAAATGTATC
TGGAACCCCAAATTTATTCGATAAAACTGAAAAAGTTGAACAAAAAAAAACTGAAATAAAAATGGGATTTTCAGTATCGG
ATAAAGTGAAAAAACAACCTGTTGAAACATTTGAAAGAGAGTCTACTGGATCTGTACTCGATAAATACTTCGTAAAAGTT
GATGATATTGATTTTGACGTAATTATTGAAAAAGAAGATGGCATTACGAAATACAAAATTCCGGAAATTACCTTAATGAA
TACTGCTCTTGCAAAATTTTCTGATTTAGATATTAAAACAATAAAATCTGAACTTTCAGAATCTACAATTCAAAAAATCG
GACAAATTCAAGGCTACATTAAAAACTATTCTGAAAAAAATAACTTACATTTAAGAGATATTGAAATACTCCACCTATCA
CATTATTTTTATTTAATAATTGGAAAATTAGGACTTTTAGAAATTCCATTAAATGATAGTAAATTAGAAGAAGTAATGGT
AAATGGGGTTGAATTACCTGCATTTGTATTCCATAGAAAATATCAGATGTGTGAAACGAATGTTCGACTAGATAGGCACG
AAGCTACCAGGGTTGTTGAAAGTATTGCATATCTTGCAGGTAGGAGCATTGATTCGAGAACTCCGATGCTTGATGCATTT
TTACCCGACGGAAGTAGGGTTAACGCCACTATGGGAGATGTCACATTAAAAGGAAACACCATTACAATTCATAAATTTAG
TGAAGACCCATTAACTATTGTTGATTTGATTAATTTCGGAACCTTTGATTTAGAACTCGCTGCATTTCTTTGGCAGGCTG
TCGAAGGATACTTTGGTGCAAAACCTGCAAACACCTTGATTGTTGGGGGAACAGGTTCGGGTAAAACCACTACATTAAAT
GTAGTTTCAATGTTTTCGATGTATACTGATAGGATTGTAACTATTGAAGATACTCCAGAGTTACAGGTTCCACTAACACA
CTTGATAAAAATGATTACAAGACCTGGAAGGCCGGGGGTCCAAGGCTATGAAATTACGATGGATGATTTAATTAAGAATT
CCTTAAGGATGAGACCAGATAGGATCTTTGTAGGGGAAGTTAGGGGTAGTGAAGCTCATTCATTGCTTGTTGCAATGAAC
ACTGGACATGATGGATGTTCTGGAACCCTGCACGCAAACAGTGCTGATGAGGCAATTATCAGATTGGTAAATCCGCCAAT
GAACGTTCCAAAAGTTATGATGTCTTCAATCGACTTTATTATAAACCAGCAACGTATCAAACGTAATAAAAAAACTGTTA
GAAGAATCCTCGGTGTTGTTGAAATCGGAGGAAGTGGGGAAAATATTACAAAAACTGAACTCTTTAAGTACGATGGAATA
AGCGACAGTGTTGTAAAAACTGGGATTTGTATGTGGGAAGAAGATGTATGCCAGATTGCAGGTATTACTCGAGATGAATT
AATGGATGATCGGATTAATAGAAAGAAAGTACTAAAATACATGGTGAACAATAATATTAGTGATATTAAAAAAGTTGGCG
ATGTAATTAAACAATATCAGGAAAATCCAGAAAATGTATTGAAACATATGTTGGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(179-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4G0F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanococcus maripaludis strain DSM 2067

90.942

100

0.909

Multiple sequence alignment