Detailed information NTG0027737

Bioinformatically predicted

Overview

• Name: epdK
• Type: Machinery gene
• Locus tag: MMARC5_RS08370
• Genome accession: NC_009135
• Coordinates: 1578823..1579881 (+)
• Length: 352 a.a.
• NCBI ID: WP_011869385.1
• Uniprot ID: A4G0F4
• Organism: Methanococcus maripaludis C5
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1573823..1584881

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MMARC5_RS08350 (MmarC5_1637)	fni	1574270..1575337 (-)	1068	WP_011869381.1	type 2 isopentenyl-diphosphate Delta-isomerase	-
MMARC5_RS08355 (MmarC5_1638)	-	1575824..1576105 (+)	282	WP_011869382.1	Gar1/Naf1 family protein	-
MMARC5_RS08360 (MmarC5_1639)	-	1576124..1577143 (+)	1020	WP_011869383.1	transcription initiation factor IIB	-
MMARC5_RS08365 (MmarC5_1640)	epdL	1577153..1578811 (+)	1659	WP_011869384.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
MMARC5_RS08370 (MmarC5_1641)	epdK	1578823..1579881 (+)	1059	WP_011869385.1	type II secretion system F family protein	Machinery gene
MMARC5_RS08375 (MmarC5_1642)	epdJ	1579886..1580782 (+)	897	WP_011869386.1	type II secretion system F family protein	Machinery gene
MMARC5_RS08380 (MmarC5_1643)	-	1580789..1581373 (-)	585	WP_011869387.1	HDIG domain-containing metalloprotein	-
MMARC5_RS08385 (MmarC5_1644)	tfe	1581383..1581940 (-)	558	WP_011869388.1	transcription factor E	-
MMARC5_RS08390 (MmarC5_1645)	-	1581944..1582993 (-)	1050	WP_011869389.1	ATP-grasp domain-containing protein	-
MMARC5_RS08395 (MmarC5_1646)	mptA	1583020..1583967 (-)	948	WP_011869390.1	GTP cyclohydrolase MptA	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 39826.82 Da
• Isoelectric Point: 9.5903

>NTDB_id=27737 MMARC5_RS08370 WP_011869385.1 1578823..1579881(+) (epdK) [Methanococcus maripaludis C5]
MKVKTEKKQSIFDKLTNILKRVKTPKKRKVSRVGRSEYLKKIFERKTEIEHDDDILEFYEPYIDETPEVSIDLDDLLFEK
GEFGALGGYSRSFSYWVTNTSFLPSKRDYQYAGIADERVYFLKMMIVAISVIILFILYGILIGNIISSFLNGALLAVIVV
IGGIFYPKLKLTLFRGEIKIQVLMSILHLISMLNSGASIQESLKNIANNPEYGITSFEFRSVIKDINQGGYNFVEALERA
KLRTKIFIMRQLYDQLILAANKGGTQLLLENLYNEIVRESLSKIDSSKFQISNLGNLIFGIGLIIPFSGMIQSALGAQQG
FDGIINAVDLVMGKIGLMSTVIFTIFIKMKIE

Nucleotide

• Length: 1059 bp

>NTDB_id=27737 MMARC5_RS08370 WP_011869385.1 1578823..1579881(+) (epdK) [Methanococcus maripaludis C5]
ATGAAAGTAAAAACTGAAAAAAAACAGAGTATTTTCGATAAACTAACCAATATATTAAAAAGAGTTAAAACTCCGAAAAA
AAGAAAAGTATCACGAGTTGGAAGATCCGAATACTTAAAAAAAATATTTGAGAGAAAAACAGAAATAGAACATGATGATG
ATATTTTAGAGTTTTATGAACCTTATATTGATGAAACTCCGGAAGTAAGTATTGATTTGGACGATTTACTTTTTGAAAAG
GGGGAATTTGGTGCATTAGGGGGATATTCTAGATCTTTTTCATACTGGGTTACAAATACGTCATTTTTACCATCTAAAAG
AGATTATCAATATGCCGGTATTGCTGATGAACGAGTTTATTTCTTAAAAATGATGATTGTGGCCATTAGTGTAATTATTT
TGTTTATATTGTATGGAATATTAATAGGTAATATAATTTCAAGTTTTTTGAATGGGGCACTTTTAGCTGTGATTGTTGTT
ATTGGAGGCATATTTTATCCAAAACTAAAATTAACCTTGTTTAGGGGGGAAATTAAAATTCAAGTCTTGATGAGTATTTT
GCACCTTATTTCCATGCTAAATTCAGGCGCGTCTATTCAGGAATCTTTGAAAAATATTGCAAATAATCCAGAATATGGAA
TTACTTCTTTTGAATTTAGAAGTGTTATAAAAGATATTAATCAGGGTGGTTATAACTTCGTAGAAGCGCTTGAAAGGGCC
AAATTAAGAACTAAAATATTTATAATGAGACAGCTTTATGATCAGCTTATTCTTGCAGCAAATAAAGGTGGAACTCAGCT
TTTACTTGAAAATTTATATAATGAAATAGTTAGAGAATCTTTATCAAAAATAGACAGTTCAAAATTCCAAATATCAAATT
TAGGTAACTTAATATTTGGTATTGGATTAATTATTCCCTTTTCCGGGATGATACAATCTGCATTAGGTGCTCAGCAAGGA
TTTGACGGCATTATAAATGCAGTTGATCTTGTAATGGGAAAAATAGGATTAATGTCAACAGTTATATTTACCATCTTTAT
TAAAATGAAGATTGAGTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (187-311)

3D structure

• AlphaFold DB: A4G0F4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
epdK	Methanococcus maripaludis strain DSM 2067	89.205	100	0.892